7651d6bcdd
Merge branch 'master' into reconnection
2019-02-21 16:01:35 -03:00
76d7cf8826
IO, DRIVER, PYTHON: Fix domain block dimensions with job restart.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-21 15:58:38 -03:00
c4c4398793
Merge branch 'master' into reconnection
2019-02-18 17:08:35 -03:00
e1ee6f39bb
DRIVER: There is no need to limit tm_exec.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-18 17:07:52 -03:00
b288f61831
Merge branch 'master' into reconnection
2019-02-18 16:59:06 -03:00
a66cd2e27f
DRIVER: Fix ETA and EXECUTION time calculation.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-18 16:57:35 -03:00
d0c5833c2b
USER_PROBLEM: Use helper subroutines to print problem parameters.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-18 12:46:04 -03:00
9eb3293245
Merge branch 'master' into reconnection
2019-02-18 12:07:52 -03:00
5086bf6bd4
DRIVER: Print problem name before initializations.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-18 12:07:02 -03:00
08d8c6250e
Merge branch 'master' into reconnection
2019-02-18 11:40:02 -03:00
0ceca17a95
PYTHON: Add refinement 'level' to be read as dataset.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-18 11:27:47 -03:00
81b94a8009
PYTHON: Remove wrong condition in amun_compatible().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-18 11:11:16 -03:00
001748ff92
PYTHON: Support older snapshots with 'rdims'.
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The new snapshots store 'domain_base_dims' instead.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-18 11:04:55 -03:00
eccc933c20
PYTHON: Check if the shrink parameter is correct.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-18 10:53:47 -03:00
aae0d8288c
Merge branch 'master' into reconnection
2019-02-15 15:58:15 -02:00
00967c153e
EVOLUTION: Small changes to evolve_rk43().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-13 15:11:47 -02:00
0d3676aaa9
Merge branch 'master' into reconnection
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-13 12:07:40 -02:00
abb1f43528
Rename nb => bcells to nn => bcells.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-13 11:44:51 -02:00
230b8eb9bf
EVOLUTION: Fix SSPRK(10,4) method.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-12 17:36:27 -02:00
da9e895406
DRIVER: Use check_status() to verify subroutine status flag.
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In addition, print error in case of any initialization or finalization
subroutine indicates problems.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-12 13:59:17 -02:00
cbc1a8335f
MPITOOLS: Add function check_status().
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This function takes one logical input, and if MPI is used reduces it
among all MPI processes with logical OR. Otherwise, it returns the input
value.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-12 12:15:14 -02:00
bf6847e5fd
MESH: Add status argument to refine/derefine_selected_blocks().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-12 11:06:34 -02:00
5a103efcf1
MESH: Add status argument to prepare_sibling_derefinement().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-12 10:50:53 -02:00
e7c546980f
MESH: Add status argument to check_data_block_refinement().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-12 10:41:48 -02:00
721cf8efae
EVOLUTION: Add status argument to advance().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-12 10:34:38 -02:00
83f25af24a
MESH: Add status argument to update_mesh().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-12 10:31:30 -02:00
5368b60f18
MESH: Add status argument to generate_mesh().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-12 10:22:53 -02:00
e31d2196f9
DOMAINS: Add status argument to setup_domain_*().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-12 09:32:11 -02:00
d7c3d3d48a
BLOCKS: Add status argument to derefine_block().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-12 08:52:00 -02:00
5bfa10e6ac
BLOCKS: Update status flag description.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-12 08:45:36 -02:00
60e002bd3b
BLOCKS: Add status argument to refine_block().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-11 22:01:18 -02:00
e6faf7dea9
BLOCKS: Remove set_block_dimensions().
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Instead, initialize block dimensions through initialize_blocks().
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-11 13:30:02 -02:00
905004951e
OPERATORS: Convert allocatable arrays into authomatic ones.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-11 13:02:22 -02:00
55b8e2f073
BLOCKS: Add status argument to build/wipe_leaf_list().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-11 12:56:14 -02:00
d205696410
BLOCKS: Add status argument to append/remove_datablock().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-11 12:42:25 -02:00
9e9c903cc1
BLOCKS: Add status argument to append/remove_metablock().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-11 12:34:20 -02:00
4e688b8fcd
BLOCKS: Add status argument to insert_metablock_after/before().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-11 12:26:57 -02:00
5caf3f37cf
BLOCKS: Add status argument to allocate/deallocate_datablock().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-11 12:09:45 -02:00
34329834a6
BLOCKS: Add status argument to allocate/deallocate_metablock().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-11 11:54:43 -02:00
3b352c89ee
INTERPOLATIONS, DRIVER: Correct nghosts in initialize_interpolations().
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The number of ghosts zone is important for the selected recontruction.
For higher order reconstruction methods, nghosts >= 4 usually.
Therefore, initialize interpolations before coordinates and correct the
number of ghost zone according to the selected interpolation method.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-11 11:27:22 -02:00
601adc8037
IO, DRIVER: Allow for restart with different number of ghost zones.
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Now we can restart from restart snapshots with different number of ghost
zones. Also, remove the old restart snapshot format support from
read_datablocks_h5().
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-11 11:02:36 -02:00
6d421e6efb
IO: Update the initialization/finalization status flag.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-11 10:01:35 -02:00
db1d3c6d4f
SCHEMES: Make initialize_schemes() resistant to wrong parameters.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-11 09:51:02 -02:00
5e7b0962bc
MESH: Update the initialization/finalization status flag.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-11 09:39:06 -02:00
cfe9614db2
MPITOOLS: Update the initialization/finalization status flag.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-11 09:36:02 -02:00
1b2251f7fc
OPERATORS: Update the initialization/finalization status flag.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-11 09:21:55 -02:00
f84250d25a
PROBLEMS: Update the initialization/finalization status flag.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-11 09:20:31 -02:00
2badc8c062
SHAPES: Update the initialization/finalization status flag.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-11 09:18:34 -02:00
f3229559e3
USER_PROBLEM: Update the initialization/finalization status flag.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-11 09:16:54 -02:00
ffdba19bb6
INTERPOLATIONS: Make initialize_interpolations() resistant to wrong parameters.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2019-02-11 09:14:51 -02:00
