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Author SHA1 Message Date
Grzegorz Kowal
a5094d1e6b EQUATIONS: Print number of fluxes and passive scalars. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-10-02 14:03:12 -03:00
Grzegorz Kowal
5760b6c40c EQUATIONS: Add parameters for the number of fluxes and passive scalars. 
Initialize these parameters and generate the names of passive scalars.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-10-02 12:28:33 -03:00
Grzegorz Kowal
0133adfc53 MPITOOLS, BOUNDARIES: Simplify arguments of exchange_real_arrays(). 
Some arguments, like sproc or stag, are redundant, so remove them.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-10-01 11:15:31 -03:00
Grzegorz Kowal
05ec954e16 COORDINATES: Print zmn & zmx, not ymn & ymx if zmn > zmx. 
Reported-by: Lorenzo Nativi <lorenzo.nativi@astro.su.se>
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-09-23 22:32:45 -03:00
Grzegorz Kowal
5847a4f086 SCHEMES: Correct numerical fluxes for higher-orders. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-03-30 22:50:08 -03:00
Grzegorz Kowal
368894560b INTERPOLATIONS: Add order module parameter. 
This parameter keeps the order of the used reconstruction.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-03-30 21:12:28 -03:00
Grzegorz Kowal
f0ca778eb6 PYTHON: Fix subroutines to read integrals. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-03-11 11:53:06 -03:00
Grzegorz Kowal
4b7615e72f INTEGRALS: Use 'magnetized' instead of 'ibx > 0'. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-03-08 07:03:39 -03:00
Grzegorz Kowal
055f67c874 MESH: Replace allocatable array with module one in prolong_block(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-03-07 11:12:49 -03:00
Grzegorz Kowal
7b241c90a8 MESH: Add status argument to prolong_block(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-03-07 10:51:00 -03:00
Grzegorz Kowal
81294d958f INTERPOLATIONS: Implement 9th order MP9 reconstruction. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-03-07 10:32:37 -03:00
Grzegorz Kowal
cc29921715 MESH: Skip higher levels, if no need for refinement in generate_mesh(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-03-04 22:49:49 -03:00
Grzegorz Kowal
55ad33889c INTEGRALS: Introduce 'integrals_append' and 'statistics_append'. 
These parameters allow to control if the integrals and statistics files
should be appended or new files should be created for the restarted
jobs.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-03-04 22:42:24 -03:00
Grzegorz Kowal
e263e4a4d8 SOURCES: Print anomalous resistivity parameters only if enabled. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-27 10:07:46 -03:00
Grzegorz Kowal
a982743d4c PROBLEMS: Change the magnetic field transition profile in current sheet. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-26 20:56:21 -03:00
Grzegorz Kowal
24f2098163 PROBLEMS: Rewrite the current sheet test problem. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-26 09:25:14 -03:00
Grzegorz Kowal
e68a068d56 SOURCES: Implement anomalous resistivity. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-25 09:53:05 -03:00
Grzegorz Kowal
9a53103f14 PYTHON: Determine the maximum level from the blocks. 
In some situations, the block refinement didn't reach the maximum level
available. There is no need to rescale all block to this level then.
Also the memory consumption in such case is significantly reduced.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-23 08:51:07 -03:00
Grzegorz Kowal
b13e728819 MESH: Improve printing of the currently generated mesh level. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-22 20:17:24 -03:00
Grzegorz Kowal
76d7cf8826 IO, DRIVER, PYTHON: Fix domain block dimensions with job restart. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-21 15:58:38 -03:00
Grzegorz Kowal
e1ee6f39bb DRIVER: There is no need to limit tm_exec. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-18 17:07:52 -03:00
Grzegorz Kowal
a66cd2e27f DRIVER: Fix ETA and EXECUTION time calculation. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-18 16:57:35 -03:00
Grzegorz Kowal
5086bf6bd4 DRIVER: Print problem name before initializations. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-18 12:07:02 -03:00
Grzegorz Kowal
0ceca17a95 PYTHON: Add refinement 'level' to be read as dataset. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-18 11:27:47 -03:00
Grzegorz Kowal
81b94a8009 PYTHON: Remove wrong condition in amun_compatible(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-18 11:11:16 -03:00
Grzegorz Kowal
001748ff92 PYTHON: Support older snapshots with 'rdims'. 
The new snapshots store 'domain_base_dims' instead.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-18 11:04:55 -03:00
Grzegorz Kowal
eccc933c20 PYTHON: Check if the shrink parameter is correct. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-18 10:53:47 -03:00
Grzegorz Kowal
00967c153e EVOLUTION: Small changes to evolve_rk43(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-13 15:11:47 -02:00
Grzegorz Kowal
abb1f43528 Rename nb => bcells to nn => bcells. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-13 11:44:51 -02:00
Grzegorz Kowal
230b8eb9bf EVOLUTION: Fix SSPRK(10,4) method. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-12 17:36:27 -02:00
Grzegorz Kowal
da9e895406 DRIVER: Use check_status() to verify subroutine status flag. 
In addition, print error in case of any initialization or finalization
subroutine indicates problems.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-12 13:59:17 -02:00
Grzegorz Kowal
cbc1a8335f MPITOOLS: Add function check_status(). 
This function takes one logical input, and if MPI is used reduces it
among all MPI processes with logical OR. Otherwise, it returns the input
value.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-12 12:15:14 -02:00
Grzegorz Kowal
bf6847e5fd MESH: Add status argument to refine/derefine_selected_blocks(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-12 11:06:34 -02:00
Grzegorz Kowal
5a103efcf1 MESH: Add status argument to prepare_sibling_derefinement(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-12 10:50:53 -02:00
Grzegorz Kowal
e7c546980f MESH: Add status argument to check_data_block_refinement(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-12 10:41:48 -02:00
Grzegorz Kowal
721cf8efae EVOLUTION: Add status argument to advance(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-12 10:34:38 -02:00
Grzegorz Kowal
83f25af24a MESH: Add status argument to update_mesh(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-12 10:31:30 -02:00
Grzegorz Kowal
5368b60f18 MESH: Add status argument to generate_mesh(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-12 10:22:53 -02:00
Grzegorz Kowal
e31d2196f9 DOMAINS: Add status argument to setup_domain_*(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-12 09:32:11 -02:00
Grzegorz Kowal
d7c3d3d48a BLOCKS: Add status argument to derefine_block(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-12 08:52:00 -02:00
Grzegorz Kowal
5bfa10e6ac BLOCKS: Update status flag description. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-12 08:45:36 -02:00
Grzegorz Kowal
60e002bd3b BLOCKS: Add status argument to refine_block(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 22:01:18 -02:00
Grzegorz Kowal
e6faf7dea9 BLOCKS: Remove set_block_dimensions(). 
Instead, initialize block dimensions through initialize_blocks().

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 13:30:02 -02:00
Grzegorz Kowal
905004951e OPERATORS: Convert allocatable arrays into authomatic ones. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 13:02:22 -02:00
Grzegorz Kowal
55b8e2f073 BLOCKS: Add status argument to build/wipe_leaf_list(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 12:56:14 -02:00
Grzegorz Kowal
d205696410 BLOCKS: Add status argument to append/remove_datablock(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 12:42:25 -02:00
Grzegorz Kowal
9e9c903cc1 BLOCKS: Add status argument to append/remove_metablock(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 12:34:20 -02:00
Grzegorz Kowal
4e688b8fcd BLOCKS: Add status argument to insert_metablock_after/before(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 12:26:57 -02:00
Grzegorz Kowal
5caf3f37cf BLOCKS: Add status argument to allocate/deallocate_datablock(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 12:09:45 -02:00
Grzegorz Kowal
34329834a6 BLOCKS: Add status argument to allocate/deallocate_metablock(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 11:54:43 -02:00