gkowal/amun-code
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity
1,737 Commits 5 Branches 0 Tags
Commit Graph

1737 Commits

This Branch
This Branch
All Branches
Author SHA1 Message Date
Grzegorz Kowal
d4059b8075 PYTHON: Read 'domain_base_dims' instead of 'rdims'. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-03 22:33:14 -02:00
Grzegorz Kowal
43b3581a9e COORDINATES: Replace ir, jr, kr with domain_base_dims(:). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-03 22:31:05 -02:00
Grzegorz Kowal
067152d321 HELPERS: Align positive and negative numbers in print_paraeter_double(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-01 11:50:33 -02:00
Grzegorz Kowal
f7ff4f6824 REFINEMENT: Rename jabs* to curr* parameters. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-01 11:40:06 -02:00
Grzegorz Kowal
d8331f64fe PARAMETERS, HELPERS: Use helper subroutines in read_parameters(). 
Increase the description length to 26 characters.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-30 22:55:07 -02:00
Grzegorz Kowal
67a842f24c IO: Use helper subroutines in print_io(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-30 22:48:30 -02:00
Grzegorz Kowal
e01f8206f6 INTERPOLATIONS: Use helper subroutines in print_interpolations(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-30 22:38:08 -02:00
Grzegorz Kowal
8bfe3adb7c SCHEMES: Use helper subroutines in print_schemes(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-30 22:32:53 -02:00
Grzegorz Kowal
6b78361cfe EVOLUTION: Use helper subroutines in print_evolution(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-30 22:30:30 -02:00
Grzegorz Kowal
9813af6ab3 REFINEMENT: Use helper subroutines in print_refinement(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-30 22:27:00 -02:00
Grzegorz Kowal
1f3a277468 SHAPES: Use helper subroutines in print_shapes(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-30 22:20:26 -02:00
Grzegorz Kowal
eed1776e2b BOUNDARIES: Use helper subroutines in print_boundaries(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-30 22:18:05 -02:00
Grzegorz Kowal
67d4f29f29 COORDINATES: Use helper subroutines in print_coordinates(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-30 22:12:40 -02:00
Grzegorz Kowal
9a43c5b19d SOURCES, HELPERS: Add print_parameter_double() to HELPERS. 
Use helper subroutines in print_sources().

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-30 18:55:41 -02:00
Grzegorz Kowal
95982be199 EQUATIONS: Convert print_equations() to use helper subroutines. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-30 18:48:10 -02:00
Grzegorz Kowal
eb7b5aa775 DRIVER, HELPERS: Print problem name in the main program part. 
Also add print_parameter_string() to module HELPERS.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-30 18:33:04 -02:00
Grzegorz Kowal
cb2b0c60ef HELPERS: Add module with helper subroutines. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-30 18:22:54 -02:00
Grzegorz Kowal
8e314ce46c Makefile: Use wildcard to determine list of source files. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-30 18:21:13 -02:00
Grzegorz Kowal
4eb292c67d DRIVER: Small change in welcome message and MPI process number. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-30 15:34:39 -02:00
Grzegorz Kowal
0582774e10 SHAPES, DRIVER: Add print_shapes(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-30 15:32:34 -02:00
Grzegorz Kowal
a97bbc736f INTERPOLATIONS, DRIVER: Add print_interpolations(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-30 15:17:21 -02:00
Grzegorz Kowal
122d228248 SCHEMES, DRIVER: Add print_schemes(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-30 14:58:40 -02:00
Grzegorz Kowal
63bde5a72b EVOLUTION, DRIVER: Add print_evolution(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-30 14:45:07 -02:00
Grzegorz Kowal
d32f7bb21a REFINEMENTS, DRIVER: Add print_refinement(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-30 12:47:15 -02:00
Grzegorz Kowal
838ec1e465 BOUNDARIES, DRIVER: Add print_boundaries(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-30 12:29:48 -02:00
Grzegorz Kowal
cf3fbf6902 DRIVER, SOURCES, EQUATIONS: Add print_sources(). 
Also add magnetized flag in EQUATIONS to indicate if the equations
system is magnetized. This helps to reduce printing some unnecessary
info.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-30 12:20:18 -02:00
Grzegorz Kowal
e7d5d00da8 DRIVER, IO: Move precise_snapshot variable to IO module. 
Also improve a bit print_io().

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-30 12:06:26 -02:00
Grzegorz Kowal
6c23e9af19 DRIVER: Reorganize the initialization/finalization of modules. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-29 18:13:24 -02:00
Grzegorz Kowal
099d077ab9 COORDINATES: Determine domain periodicity during initialization. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-29 18:00:09 -02:00
Grzegorz Kowal
feb14685bc DRIVER: Initialize refinement after domains. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-29 17:49:40 -02:00
Grzegorz Kowal
09f032faba DOMAINS, DRIVER: Initialize and finalize domains module. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-29 17:46:57 -02:00
Grzegorz Kowal
ea993ed8d0 BLOCKS, DRIVER: Initialize block dimensions in initialize_blocks(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-29 17:26:24 -02:00
Grzegorz Kowal
b5d177bc72 COORDINATES, DRIVER: Separate coordinate info from initialization. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-29 17:02:50 -02:00
Grzegorz Kowal
2ecdf030d6 DRIVER, EQUATIONS: Separate equation info from initialization. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-29 15:54:02 -02:00
Grzegorz Kowal
7a2d694629 DRIVER, IO: Initialize I/O after reading parameters. 
Use it to handle parameters from restart snapshots. Also separate
printing I/O parameters from I/O module initialization.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-29 15:07:50 -02:00
Grzegorz Kowal
0f0e14dfed DRIVER: Organize IO and mesh initialization and finalization. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-29 11:02:57 -02:00
Grzegorz Kowal
220e881b58 DRIVER: Initialize evolution, schemes, interpolations after shapes. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-29 10:56:20 -02:00
Grzegorz Kowal
908b94c482 DRIVER: Initialize shapes after refinement. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-29 10:52:08 -02:00
Grzegorz Kowal
86bf933f05 DRIVER: Initialize refinement after boundaries. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-29 10:47:47 -02:00
Grzegorz Kowal
e045c30e1a DRIVER: Initialize blocks and boundaries after coordinates. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-29 10:45:50 -02:00
Grzegorz Kowal
2a6062cbd5 DRIVER, COORDINATES, IO: Pass more fixed parameters to initialize_coordinates(). 
Parameters such block dimensions, the base level dimensions, or the
domain extrema cannot be modified when the job is restarted, so read
them from the restart snapshots.

Also add new subroutine to IO read integer vector attribute from the
HDF5 snapshots.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-29 10:38:16 -02:00
Grzegorz Kowal
b0953016a5 DRIVER, SOURCES: Initialize sources after equations. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-29 10:05:36 -02:00
Grzegorz Kowal
4aa92643ab DRIVER, PROBLEMS, IO: Initiate problems earlier. 
Also store the problem name in the restart snapshot.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-29 09:59:09 -02:00
Grzegorz Kowal
2ae8cd14f1 DRIVER: Move initialize_equations() to be called earlier. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-29 09:25:15 -02:00
Grzegorz Kowal
bdddceae06 DRIVER: Print timings at the end and remove error info. 
The error info is not complete and probably broken. It should be
rewritten.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-28 22:25:41 -02:00
Grzegorz Kowal
b843baa638 PARAMETERS: Make get_parameter_*() private. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-28 21:37:18 -02:00
Grzegorz Kowal
4b0d4409eb USER_PROBLEM: Replace explicit calls to get_parameter_*() with unified one. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-28 21:33:24 -02:00
Grzegorz Kowal
93342fb333 SOURCES: Replace explicit calls to get_parameter_*() with unified one. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-28 21:32:37 -02:00
Grzegorz Kowal
9a93239240 SHAPES: Replace explicit calls to get_parameter_*() with unified one. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-28 21:32:08 -02:00
Grzegorz Kowal
54f5a6084f SCHEMES: Replace explicit calls to get_parameter_*() with unified one. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-28 21:31:30 -02:00