b5183dfa0e
IO: Store hashes as integers in read_restart_snapshot_xml().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-30 12:20:14 -03:00
a53601ff92
HASH, IO: Rewrite module HASH.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-30 12:04:30 -03:00
1fd1ee7602
IO: Add compression suffix to files individually.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-29 12:23:26 -03:00
b10b49c8c3
COMPRESSION: Add compression_suffix to store the file extension.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-29 12:08:42 -03:00
de81332cf8
COMPRESSION: Reset clen in case the compression is unsupported.
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This will indicate that no compression should be used.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-29 08:27:21 -03:00
88cdf23078
COMPRESSION, IO: Remove double buffer for compression.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-28 23:27:03 -03:00
9ddf7c7b44
IO: Use compression_bound() to determine the buffer size.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-28 22:38:30 -03:00
e4ffa62714
COMPRESSION: Add function to determine the compression buffer size.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-28 22:32:51 -03:00
e6fc8e5d24
COMPRESSION: Pass the input length to compress().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-28 22:19:50 -03:00
20282539f9
COMPRESSION: Use ENUM to enumerate compression formats.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-28 09:59:20 -03:00
82dfcf3c29
USER_PROBLEM: Remove unused stuff.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-26 17:15:02 -03:00
3081ac0d5f
BOUNDARIES: Fix wrong conditions in block_boundary_specific().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-26 17:07:31 -03:00
8fb3abacbf
PROBLEM, SYSTEM: Move USER_PROBLEM initialization to SYSTEM.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-26 16:48:54 -03:00
fd40fffc64
BOUNDARIES: Add interface to custom boundaries.
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Also return the call status from block_boundary_specific().
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-26 16:42:53 -03:00
4ceb008987
SHAPES: Do not pull update_user_shapes() from module USER_PROBLEM.
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The pointer to update_shapes can be associated in
initialize_user_problem().
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-26 13:47:05 -03:00
25ad944f44
SOURCES: Add procedure interface for extra source terms.
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A user defined source terms can be pointer to the procedure pointer
'update_extra_sources'.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-26 13:37:25 -03:00
2b60ebaa3f
MESH: Fix condition for deferinement of sibling blocks.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-25 18:01:35 -03:00
aa552c7a51
SYSTEM: Reset seeds in initialize_system().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-25 11:56:01 -03:00
54263b263c
RANDOM: Add subroutine to reset the seeds.
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This subroutine will restore the initial seeds values.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-25 11:54:06 -03:00
99d9f1c9f1
AMUN: Initialize RNG before module SYSTEM.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-25 11:48:45 -03:00
cfac02db87
MESH: Make procedure pointer setup_domain public.
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If a user decides to write a subroutine to generate a problem specific
domain, it is enough to point this pointer in, e.g.,
initialize_user_problem() to the user's custom domain setup subroutine.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-25 10:37:47 -03:00
a03375122b
IO: Resume jobs from HDF5 restart snapshots for different nghosts.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-25 10:33:55 -03:00
1f1ae8084f
EVOLUTION: Remove warning in initialize_evolution() if NDIMS=2.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-25 08:39:52 -03:00
3d6bf16f91
USER_PROBLEM: Remove user_gravitational_acceleration().
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It is an empty subroutine. It is better to describe in the documentation
how to write subroutine for custom gravitational acceleration and point
it to gravitationa_acceleration from module GRAVITY.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-25 08:34:45 -03:00
aea03e669e
MESH: Return call status from redistribute_blocks().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-25 08:33:32 -03:00
8c83be9cb4
REFINEMENT: Implement the interface for user refinement criterion.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-24 22:44:28 -03:00
a395cf8cda
SCHEMES: Remove unused variables.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-24 13:22:27 -03:00
2b04148e88
MESH: Remove unused variables.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-24 13:20:03 -03:00
78ae62528a
EVOLUTION: Eliminate uninitialized conditions.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-24 13:16:59 -03:00
a9b13d7d8d
BOUNDARIES: Initialize ecount.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-24 13:04:10 -03:00
9805090290
HASH: Clean up the code according to XXHASH flag.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-24 12:49:40 -03:00
fd4029a196
PYTHON: Rewrite Amun module to support old and new snapshots.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-24 12:33:33 -03:00
a1cf8f9192
IO: Rewrite and rename store_snapshot_xml().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-23 18:03:33 -03:00
2dedf75be4
IO: Rewrite and rename store_restart_snapshot_xml().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-23 17:56:17 -03:00
aeb71db1d3
IO: Remove useless comments from initialize_io().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-23 16:46:41 -03:00
d564f2dc5f
IO: Import HDF5 module for all IO subroutines.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-23 16:40:30 -03:00
4fca13a3e4
IO: Enable compression for HDF5 datasets.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-23 16:37:19 -03:00
e83c9bb09d
IO: Remove old HDF5 read_attribute subroutines.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-23 13:09:33 -03:00
2658d6385e
IO: Add missing group closing in restore_attributes_h5().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-23 13:07:46 -03:00
87dfeec608
IO: Rewrite subroutine read_restart_snapshot_h5().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-23 13:06:42 -03:00
92622f1b17
IO: Rewrite read_snapshot_parameter_double_h5().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-23 10:18:07 -03:00
e1b3e2f10f
IO: Rewrite read_snapshot_parameter_integer_h5().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-23 10:17:26 -03:00
b49123e83b
IO: Rewrite read_snapshot_parameter_string_h5().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-23 10:16:34 -03:00
3924aadf88
IO: Remove all read_adday() subroutines.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-23 10:14:24 -03:00
ac8a4f5928
IO: Fix conditions in store_restart_snapshot_h5().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-23 10:12:12 -03:00
53e41e6b5f
IO: Remove subroutine read_attributes_h5().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-23 10:10:38 -03:00
48826f5d6d
IO: Use restore_attributes_h5() instead of read_attributes_h5().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-23 10:09:25 -03:00
618765e588
IO: Add subroutine restore_attributes_h5().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-23 10:08:09 -03:00
2c1fbe94fd
IO: Rewrite subroutine store_attributes_h5().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-23 10:07:14 -03:00
329b73bf9d
IO: Remove subroutine read_metablocks_h5().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-23 10:05:44 -03:00
