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Author SHA1 Message Date
Grzegorz Kowal
aa552c7a51 SYSTEM: Reset seeds in initialize_system(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-25 11:56:01 -03:00
Grzegorz Kowal
54263b263c RANDOM: Add subroutine to reset the seeds. 
This subroutine will restore the initial seeds values.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-25 11:54:06 -03:00
Grzegorz Kowal
99d9f1c9f1 AMUN: Initialize RNG before module SYSTEM. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-25 11:48:45 -03:00
Grzegorz Kowal
cfac02db87 MESH: Make procedure pointer setup_domain public. 
If a user decides to write a subroutine to generate a problem specific
domain, it is enough to point this pointer in, e.g.,
initialize_user_problem() to the user's custom domain setup subroutine.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-25 10:37:47 -03:00
Grzegorz Kowal
a03375122b IO: Resume jobs from HDF5 restart snapshots for different nghosts. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-25 10:33:55 -03:00
Grzegorz Kowal
1f1ae8084f EVOLUTION: Remove warning in initialize_evolution() if NDIMS=2. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-25 08:39:52 -03:00
Grzegorz Kowal
3d6bf16f91 USER_PROBLEM: Remove user_gravitational_acceleration(). 
It is an empty subroutine. It is better to describe in the documentation
how to write subroutine for custom gravitational acceleration and point
it to gravitationa_acceleration from module GRAVITY.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-25 08:34:45 -03:00
Grzegorz Kowal
aea03e669e MESH: Return call status from redistribute_blocks(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-25 08:33:32 -03:00
Grzegorz Kowal
8c83be9cb4 REFINEMENT: Implement the interface for user refinement criterion. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-24 22:44:28 -03:00
Grzegorz Kowal
a395cf8cda SCHEMES: Remove unused variables. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-24 13:22:27 -03:00
Grzegorz Kowal
2b04148e88 MESH: Remove unused variables. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-24 13:20:03 -03:00
Grzegorz Kowal
78ae62528a EVOLUTION: Eliminate uninitialized conditions. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-24 13:16:59 -03:00
Grzegorz Kowal
a9b13d7d8d BOUNDARIES: Initialize ecount. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-24 13:04:10 -03:00
Grzegorz Kowal
9805090290 HASH: Clean up the code according to XXHASH flag. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-24 12:49:40 -03:00
Grzegorz Kowal
fd4029a196 PYTHON: Rewrite Amun module to support old and new snapshots. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-24 12:33:33 -03:00
Grzegorz Kowal
a1cf8f9192 IO: Rewrite and rename store_snapshot_xml(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-23 18:03:33 -03:00
Grzegorz Kowal
2dedf75be4 IO: Rewrite and rename store_restart_snapshot_xml(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-23 17:56:17 -03:00
Grzegorz Kowal
aeb71db1d3 IO: Remove useless comments from initialize_io(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-23 16:46:41 -03:00
Grzegorz Kowal
d564f2dc5f IO: Import HDF5 module for all IO subroutines. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-23 16:40:30 -03:00
Grzegorz Kowal
4fca13a3e4 IO: Enable compression for HDF5 datasets. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-23 16:37:19 -03:00
Grzegorz Kowal
e83c9bb09d IO: Remove old HDF5 read_attribute subroutines. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-23 13:09:33 -03:00
Grzegorz Kowal
2658d6385e IO: Add missing group closing in restore_attributes_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-23 13:07:46 -03:00
Grzegorz Kowal
87dfeec608 IO: Rewrite subroutine read_restart_snapshot_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-23 13:06:42 -03:00
Grzegorz Kowal
92622f1b17 IO: Rewrite read_snapshot_parameter_double_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-23 10:18:07 -03:00
Grzegorz Kowal
e1b3e2f10f IO: Rewrite read_snapshot_parameter_integer_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-23 10:17:26 -03:00
Grzegorz Kowal
b49123e83b IO: Rewrite read_snapshot_parameter_string_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-23 10:16:34 -03:00
Grzegorz Kowal
3924aadf88 IO: Remove all read_adday() subroutines. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-23 10:14:24 -03:00
Grzegorz Kowal
ac8a4f5928 IO: Fix conditions in store_restart_snapshot_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-23 10:12:12 -03:00
Grzegorz Kowal
53e41e6b5f IO: Remove subroutine read_attributes_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-23 10:10:38 -03:00
Grzegorz Kowal
48826f5d6d IO: Use restore_attributes_h5() instead of read_attributes_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-23 10:09:25 -03:00
Grzegorz Kowal
618765e588 IO: Add subroutine restore_attributes_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-23 10:08:09 -03:00
Grzegorz Kowal
2c1fbe94fd IO: Rewrite subroutine store_attributes_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-23 10:07:14 -03:00
Grzegorz Kowal
329b73bf9d IO: Remove subroutine read_metablocks_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-23 10:05:44 -03:00
Grzegorz Kowal
8499a4bc95 IO: Use restore_metablocks_h5() instead of read_metablocks_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-23 10:04:46 -03:00
Grzegorz Kowal
0af83cd49e IO: Add subroutine restore_metablocks_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-23 10:03:44 -03:00
Grzegorz Kowal
6ff771f30d IO: Rewrite subroutine store_metablocks_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-23 10:02:39 -03:00
Grzegorz Kowal
0659e04289 IO: Remove subroutine read_datablocks_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-23 10:01:19 -03:00
Grzegorz Kowal
3247577749 IO: Use restore_datablocks_h5() insead of read_datablocks_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-23 10:00:22 -03:00
Grzegorz Kowal
894d5d0680 IO: Add subroutine restore_datablocks_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-23 09:58:53 -03:00
Grzegorz Kowal
0d65f08499 IO: Rewrite subroutine store_datablocks_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-23 09:58:02 -03:00
Grzegorz Kowal
7dd68c6ea7 IO: Rewrite subroutine store_coordinates_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-23 09:55:59 -03:00
Grzegorz Kowal
6287c18ded IO: Rewrite subroutine store_variables_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-23 09:54:57 -03:00
Grzegorz Kowal
ad6e1592c4 IO: Add interface for restore_attribute_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-23 09:53:22 -03:00
Grzegorz Kowal
9cf04971eb IO: Add subroutine restore_attribute_string_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-23 09:51:57 -03:00
Grzegorz Kowal
583ec00232 IO: Add subroutine restore_attribute_number_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-23 09:50:45 -03:00
Grzegorz Kowal
6bb123b407 IO: Rewrite store_attribute_string_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-23 09:49:05 -03:00
Grzegorz Kowal
02538128fc IO: Rewrite store_attribute_number_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-23 09:47:50 -03:00
Grzegorz Kowal
2e1b974aed IO: Add subroutine read_dataset_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-23 09:46:02 -03:00
Grzegorz Kowal
726cd16fcb IO: Rewrite store_dataset_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-23 09:44:23 -03:00
Grzegorz Kowal
e2f2df6cd6 IO: Remove all HDF5 write_array subroutines. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-21 20:34:48 -03:00