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48 Commits

Author SHA1 Message Date
Grzegorz Kowal
5086bf6bd4 DRIVER: Print problem name before initializations. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-18 12:07:02 -03:00
Grzegorz Kowal
da9e895406 DRIVER: Use check_status() to verify subroutine status flag. 
In addition, print error in case of any initialization or finalization
subroutine indicates problems.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-12 13:59:17 -02:00
Grzegorz Kowal
721cf8efae EVOLUTION: Add status argument to advance(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-12 10:34:38 -02:00
Grzegorz Kowal
5368b60f18 MESH: Add status argument to generate_mesh(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-12 10:22:53 -02:00
Grzegorz Kowal
e6faf7dea9 BLOCKS: Remove set_block_dimensions(). 
Instead, initialize block dimensions through initialize_blocks().

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 13:30:02 -02:00
Grzegorz Kowal
55b8e2f073 BLOCKS: Add status argument to build/wipe_leaf_list(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 12:56:14 -02:00
Grzegorz Kowal
3b352c89ee INTERPOLATIONS, DRIVER: Correct nghosts in initialize_interpolations(). 
The number of ghosts zone is important for the selected recontruction.
For higher order reconstruction methods, nghosts >= 4 usually.
Therefore, initialize interpolations before coordinates and correct the
number of ghost zone according to the selected interpolation method.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 11:27:22 -02:00
Grzegorz Kowal
601adc8037 IO, DRIVER: Allow for restart with different number of ghost zones. 
Now we can restart from restart snapshots with different number of ghost
zones. Also, remove the old restart snapshot format support from
read_datablocks_h5().

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 11:02:36 -02:00
Grzegorz Kowal
cfe9614db2 MPITOOLS: Update the initialization/finalization status flag. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 09:36:02 -02:00
Grzegorz Kowal
40f15e3117 INTEGRALS: Update the initialization/finalization status flag. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 08:38:15 -02:00
Grzegorz Kowal
dc8c1aaaa7 DRIVER: Do not print timings in the case of initialization errors. 
If there was any problem with the initialization, there is no point in
printing the timings. Just leave the last error message and quit the
program.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-08 09:56:51 -02:00
Grzegorz Kowal
3dc8f57fb5 DRIVER: Use bcells instead of im, jm, km. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-04 17:57:06 -02:00
Grzegorz Kowal
eb7b5aa775 DRIVER, HELPERS: Print problem name in the main program part. 
Also add print_parameter_string() to module HELPERS.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-30 18:33:04 -02:00
Grzegorz Kowal
cb2b0c60ef HELPERS: Add module with helper subroutines. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-30 18:22:54 -02:00
Grzegorz Kowal
4eb292c67d DRIVER: Small change in welcome message and MPI process number. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-30 15:34:39 -02:00
Grzegorz Kowal
0582774e10 SHAPES, DRIVER: Add print_shapes(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-30 15:32:34 -02:00
Grzegorz Kowal
a97bbc736f INTERPOLATIONS, DRIVER: Add print_interpolations(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-30 15:17:21 -02:00
Grzegorz Kowal
122d228248 SCHEMES, DRIVER: Add print_schemes(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-30 14:58:40 -02:00
Grzegorz Kowal
63bde5a72b EVOLUTION, DRIVER: Add print_evolution(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-30 14:45:07 -02:00
Grzegorz Kowal
d32f7bb21a REFINEMENTS, DRIVER: Add print_refinement(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-30 12:47:15 -02:00
Grzegorz Kowal
838ec1e465 BOUNDARIES, DRIVER: Add print_boundaries(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-30 12:29:48 -02:00
Grzegorz Kowal
cf3fbf6902 DRIVER, SOURCES, EQUATIONS: Add print_sources(). 
Also add magnetized flag in EQUATIONS to indicate if the equations
system is magnetized. This helps to reduce printing some unnecessary
info.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-30 12:20:18 -02:00
Grzegorz Kowal
e7d5d00da8 DRIVER, IO: Move precise_snapshot variable to IO module. 
Also improve a bit print_io().

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-30 12:06:26 -02:00
Grzegorz Kowal
6c23e9af19 DRIVER: Reorganize the initialization/finalization of modules. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-29 18:13:24 -02:00
Grzegorz Kowal
feb14685bc DRIVER: Initialize refinement after domains. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-29 17:49:40 -02:00
Grzegorz Kowal
09f032faba DOMAINS, DRIVER: Initialize and finalize domains module. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-29 17:46:57 -02:00
Grzegorz Kowal
ea993ed8d0 BLOCKS, DRIVER: Initialize block dimensions in initialize_blocks(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-29 17:26:24 -02:00
Grzegorz Kowal
b5d177bc72 COORDINATES, DRIVER: Separate coordinate info from initialization. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-29 17:02:50 -02:00
Grzegorz Kowal
2ecdf030d6 DRIVER, EQUATIONS: Separate equation info from initialization. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-29 15:54:02 -02:00
Grzegorz Kowal
7a2d694629 DRIVER, IO: Initialize I/O after reading parameters. 
Use it to handle parameters from restart snapshots. Also separate
printing I/O parameters from I/O module initialization.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-29 15:07:50 -02:00
Grzegorz Kowal
0f0e14dfed DRIVER: Organize IO and mesh initialization and finalization. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-29 11:02:57 -02:00
Grzegorz Kowal
220e881b58 DRIVER: Initialize evolution, schemes, interpolations after shapes. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-29 10:56:20 -02:00
Grzegorz Kowal
908b94c482 DRIVER: Initialize shapes after refinement. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-29 10:52:08 -02:00
Grzegorz Kowal
86bf933f05 DRIVER: Initialize refinement after boundaries. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-29 10:47:47 -02:00
Grzegorz Kowal
e045c30e1a DRIVER: Initialize blocks and boundaries after coordinates. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-29 10:45:50 -02:00
Grzegorz Kowal
2a6062cbd5 DRIVER, COORDINATES, IO: Pass more fixed parameters to initialize_coordinates(). 
Parameters such block dimensions, the base level dimensions, or the
domain extrema cannot be modified when the job is restarted, so read
them from the restart snapshots.

Also add new subroutine to IO read integer vector attribute from the
HDF5 snapshots.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-29 10:38:16 -02:00
Grzegorz Kowal
b0953016a5 DRIVER, SOURCES: Initialize sources after equations. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-29 10:05:36 -02:00
Grzegorz Kowal
4aa92643ab DRIVER, PROBLEMS, IO: Initiate problems earlier. 
Also store the problem name in the restart snapshot.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-29 09:59:09 -02:00
Grzegorz Kowal
2ae8cd14f1 DRIVER: Move initialize_equations() to be called earlier. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-29 09:25:15 -02:00
Grzegorz Kowal
bdddceae06 DRIVER: Print timings at the end and remove error info. 
The error info is not complete and probably broken. It should be
rewritten.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-28 22:25:41 -02:00
Grzegorz Kowal
e884804f8c DRIVER: Replace explicit calls to get_parameter_*() with unified one. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-28 21:06:32 -02:00
Grzegorz Kowal
26bf99d4c1 DRIVER, EQUATIONS: Reset eqsys and eos for restarted jobs. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-28 20:21:38 -02:00
Grzegorz Kowal
fc5db6dd29 DRIVER, IO, COORDINATES: Reset toplev for restarted jobs. 
If the job was restart with different maxlev, then
initialize_coordinates() has to know about it, so it generate
appropriate coordinates.

Read maxlev from the restart snapshot, if the job was restarted, and set
toplev as the maximum value between the previous and current maxlev.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-28 18:56:39 -02:00
Grzegorz Kowal
01276925ee DRIVER: Add flag to identify if the run is for restarted job. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-28 15:53:50 -02:00
Grzegorz Kowal
4f7248533f DRIVER, PARAMETERS: Log problems with parameters file in error output. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-28 15:45:35 -02:00
Grzegorz Kowal
cf8f0e8003 MPITOOLS: Implement the return flag for initialize_mpitools(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-28 15:30:52 -02:00
Grzegorz Kowal
50cf1b57b7 DRIVER: Print parallelization info just after the code intro. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-28 15:03:19 -02:00
Grzegorz Kowal
f8b65842af Move source files from src/ to sources/. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-28 09:14:20 -02:00