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Author SHA1 Message Date
Grzegorz Kowal
b13e728819 MESH: Improve printing of the currently generated mesh level. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-22 20:17:24 -03:00
Grzegorz Kowal
76d7cf8826 IO, DRIVER, PYTHON: Fix domain block dimensions with job restart. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-21 15:58:38 -03:00
Grzegorz Kowal
e1ee6f39bb DRIVER: There is no need to limit tm_exec. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-18 17:07:52 -03:00
Grzegorz Kowal
a66cd2e27f DRIVER: Fix ETA and EXECUTION time calculation. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-18 16:57:35 -03:00
Grzegorz Kowal
5086bf6bd4 DRIVER: Print problem name before initializations. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-18 12:07:02 -03:00
Grzegorz Kowal
0ceca17a95 PYTHON: Add refinement 'level' to be read as dataset. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-18 11:27:47 -03:00
Grzegorz Kowal
81b94a8009 PYTHON: Remove wrong condition in amun_compatible(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-18 11:11:16 -03:00
Grzegorz Kowal
001748ff92 PYTHON: Support older snapshots with 'rdims'. 
The new snapshots store 'domain_base_dims' instead.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-18 11:04:55 -03:00
Grzegorz Kowal
eccc933c20 PYTHON: Check if the shrink parameter is correct. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-18 10:53:47 -03:00
Grzegorz Kowal
00967c153e EVOLUTION: Small changes to evolve_rk43(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-13 15:11:47 -02:00
Grzegorz Kowal
abb1f43528 Rename nb => bcells to nn => bcells. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-13 11:44:51 -02:00
Grzegorz Kowal
230b8eb9bf EVOLUTION: Fix SSPRK(10,4) method. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-12 17:36:27 -02:00
Grzegorz Kowal
da9e895406 DRIVER: Use check_status() to verify subroutine status flag. 
In addition, print error in case of any initialization or finalization
subroutine indicates problems.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-12 13:59:17 -02:00
Grzegorz Kowal
cbc1a8335f MPITOOLS: Add function check_status(). 
This function takes one logical input, and if MPI is used reduces it
among all MPI processes with logical OR. Otherwise, it returns the input
value.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-12 12:15:14 -02:00
Grzegorz Kowal
bf6847e5fd MESH: Add status argument to refine/derefine_selected_blocks(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-12 11:06:34 -02:00
Grzegorz Kowal
5a103efcf1 MESH: Add status argument to prepare_sibling_derefinement(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-12 10:50:53 -02:00
Grzegorz Kowal
e7c546980f MESH: Add status argument to check_data_block_refinement(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-12 10:41:48 -02:00
Grzegorz Kowal
721cf8efae EVOLUTION: Add status argument to advance(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-12 10:34:38 -02:00
Grzegorz Kowal
83f25af24a MESH: Add status argument to update_mesh(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-12 10:31:30 -02:00
Grzegorz Kowal
5368b60f18 MESH: Add status argument to generate_mesh(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-12 10:22:53 -02:00
Grzegorz Kowal
e31d2196f9 DOMAINS: Add status argument to setup_domain_*(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-12 09:32:11 -02:00
Grzegorz Kowal
d7c3d3d48a BLOCKS: Add status argument to derefine_block(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-12 08:52:00 -02:00
Grzegorz Kowal
5bfa10e6ac BLOCKS: Update status flag description. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-12 08:45:36 -02:00
Grzegorz Kowal
60e002bd3b BLOCKS: Add status argument to refine_block(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 22:01:18 -02:00
Grzegorz Kowal
e6faf7dea9 BLOCKS: Remove set_block_dimensions(). 
Instead, initialize block dimensions through initialize_blocks().

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 13:30:02 -02:00
Grzegorz Kowal
905004951e OPERATORS: Convert allocatable arrays into authomatic ones. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 13:02:22 -02:00
Grzegorz Kowal
55b8e2f073 BLOCKS: Add status argument to build/wipe_leaf_list(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 12:56:14 -02:00
Grzegorz Kowal
d205696410 BLOCKS: Add status argument to append/remove_datablock(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 12:42:25 -02:00
Grzegorz Kowal
9e9c903cc1 BLOCKS: Add status argument to append/remove_metablock(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 12:34:20 -02:00
Grzegorz Kowal
4e688b8fcd BLOCKS: Add status argument to insert_metablock_after/before(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 12:26:57 -02:00
Grzegorz Kowal
5caf3f37cf BLOCKS: Add status argument to allocate/deallocate_datablock(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 12:09:45 -02:00
Grzegorz Kowal
34329834a6 BLOCKS: Add status argument to allocate/deallocate_metablock(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 11:54:43 -02:00
Grzegorz Kowal
3b352c89ee INTERPOLATIONS, DRIVER: Correct nghosts in initialize_interpolations(). 
The number of ghosts zone is important for the selected recontruction.
For higher order reconstruction methods, nghosts >= 4 usually.
Therefore, initialize interpolations before coordinates and correct the
number of ghost zone according to the selected interpolation method.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 11:27:22 -02:00
Grzegorz Kowal
601adc8037 IO, DRIVER: Allow for restart with different number of ghost zones. 
Now we can restart from restart snapshots with different number of ghost
zones. Also, remove the old restart snapshot format support from
read_datablocks_h5().

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 11:02:36 -02:00
Grzegorz Kowal
6d421e6efb IO: Update the initialization/finalization status flag. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 10:01:35 -02:00
Grzegorz Kowal
db1d3c6d4f SCHEMES: Make initialize_schemes() resistant to wrong parameters. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 09:51:02 -02:00
Grzegorz Kowal
5e7b0962bc MESH: Update the initialization/finalization status flag. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 09:39:06 -02:00
Grzegorz Kowal
cfe9614db2 MPITOOLS: Update the initialization/finalization status flag. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 09:36:02 -02:00
Grzegorz Kowal
1b2251f7fc OPERATORS: Update the initialization/finalization status flag. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 09:21:55 -02:00
Grzegorz Kowal
f84250d25a PROBLEMS: Update the initialization/finalization status flag. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 09:20:31 -02:00
Grzegorz Kowal
2badc8c062 SHAPES: Update the initialization/finalization status flag. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 09:18:34 -02:00
Grzegorz Kowal
f3229559e3 USER_PROBLEM: Update the initialization/finalization status flag. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 09:16:54 -02:00
Grzegorz Kowal
ffdba19bb6 INTERPOLATIONS: Make initialize_interpolations() resistant to wrong parameters. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 09:14:51 -02:00
Grzegorz Kowal
40f15e3117 INTEGRALS: Update the initialization/finalization status flag. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 08:38:15 -02:00
Grzegorz Kowal
bfbc972e24 GRAVITY: Update the initialization/finalization status flag. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 08:35:38 -02:00
Grzegorz Kowal
a772a9cf55 DOMAINS: Update the initialization/finalization status flag. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 08:34:01 -02:00
Grzegorz Kowal
7eb75ba08c BOUNDARIES: Update the initialization/finalization status flag. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 08:32:27 -02:00
Grzegorz Kowal
e6a1206919 BLOCKS: Update the initialization/finalization status flag. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-11 08:28:36 -02:00
Grzegorz Kowal
1e3dae9add REFINEMENT: Make initialize_refinement() resistant to wrong parameters. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-10 21:47:45 -02:00
Grzegorz Kowal
38d52cd6cd COORDINATES: Make initialize_coordinates() resistant to wrong parameters. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-08 16:30:53 -02:00