c2294cbe5e
IO: Store hashes with leading zeros in write_restart_snapshot_xml().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-05-11 18:29:18 -03:00
5a9ea1dc92
IO: Verify hashes while reading XML+binary restart snapshots.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-05-11 18:19:33 -03:00
52d899aa72
IO: Store hashes of binary files in XML+binary restar snapshots.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-05-11 15:19:25 -03:00
cf39fa7292
HASH: Add Fortran implementation of 64-bit xxHash function.
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The aim of the hash function is to verify consistency of the binary data
written in the snapshots.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-05-11 14:00:16 -03:00
c5aa43f8ff
FORCING: Correct calculation of the acceleration RMS value.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-05-09 19:58:39 -03:00
bd1b4724e8
HELPERS: Increase show precision of real parameters to 5 digits.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-05-08 18:39:03 -03:00
638fba8902
USER_PROBLEM: Print parameters.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-05-08 18:35:37 -03:00
195d8895b0
FORCING: Rewrite Fourier forcing so both methods use vectors e1 and e2.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-05-07 19:28:04 -03:00
09612783a7
Revert "FORCING: Take into account solenoidal parameter in e1 and e2 vectors."
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This reverts commit 0303f4ed84c752324bb5c9195dcab1547c0df4b9.
2020-05-03 19:06:48 -03:00
0303f4ed84
FORCING: Take into account solenoidal parameter in e1 and e2 vectors.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-05-03 18:20:53 -03:00
15162344f5
FORCING: Driving time and velocity scales are determined from the power.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-05-03 17:23:48 -03:00
836b1a873c
FORCING: Calculate driving scales from driving power.
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The driving power and injection scale determine the characteristic time
velocity and acceleration scales.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-05-03 17:20:45 -03:00
3dce6e683f
PYTHON: Some fixes for 3D runs.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-05-01 21:25:43 -03:00
f1c30dffec
EVOLUTION, FORCING: Call update_forcing() only when enabled.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-05-01 21:16:46 -03:00
5c554a2b2d
IO: Do not store driving coefficients if nmodes == 0.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-05-01 21:06:34 -03:00
add0759308
IO: Handle properly seeds and driving coeffs in HDF5 restart files.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-05-01 20:58:27 -03:00
62b835ccf8
README: Add brief info how to read data.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-05-01 15:34:33 -03:00
775537cecf
Update README
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-05-01 15:24:01 -03:00
e86b9f7339
PYTHON: Add function to read datablocks.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-05-01 15:02:44 -03:00
084750da46
PYTHON: Handle properly snapshot chunks with no datablocks.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-05-01 13:18:29 -03:00
6978aee6ef
PYTHON: Add class to handle XML-binary snapshots.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-05-01 12:53:23 -03:00
13858e6456
IO: Implement XML+binary format of the regular snapshots.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-05-01 11:40:37 -03:00
4550af59d4
IO: Fix mismatch in the XML restart snapshot.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-04-30 14:31:01 -03:00
59bc5482ea
IO: Fix calling read_snapshot_parameter_h5().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-04-30 07:57:34 -03:00
a533978dff
DRIVER: read_snapshot_parameter() is supported independently of HDF5.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-04-29 17:39:19 -03:00
07e74abfa9
IO: Implement XML+binary format of the restart snapshots.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-04-29 17:38:41 -03:00
0631962b4d
FORCING: Export the number and coefficients of driving modes.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-04-29 17:37:41 -03:00
727c711478
PARAMETERS: Add subroutine to return the parameter file.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-04-29 17:36:54 -03:00
7e6332125f
RANDOM: Export gentype parameter.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-04-29 17:36:20 -03:00
408f42151d
IO, DRIVER: Store x/y/zblocks separately.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-04-28 14:40:04 -03:00
63013b25be
DRIVER: Fix compilation with empty OUTPUT flag.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-04-28 14:31:53 -03:00
586df0bfa6
FORCING: Fix generation of vectors e1 and e2 in Alvelius method.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-04-28 14:25:15 -03:00
4f9c5015d4
Make.default: Turn off HDF5 by default.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-04-28 14:10:30 -03:00
9f2f07ba42
Makefile: Allow OUTPUT to accept zero or more flags.
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It should be useful for using a few future snapshot formats at the
same time.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-04-28 14:06:39 -03:00
6217358c99
RANDOM: Add status argument to initialize_random().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-04-28 14:04:22 -03:00
5cf9b98231
Due to recent changes HDF5 version 1.10+ is required.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-04-26 14:25:06 -03:00
6b52998fef
Use debian image in the bitbucket pipeline.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-04-26 11:07:11 -03:00
24d33316ae
RANDOM: Change Marsaglia's xorshift to Vigna's xoshiro256+ generator.
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Completely rewrite the random generator module. The new method is
true 64-bit floating point generator in contrast to 32-bit Marsaglia's
methods. Add recommended seeds' initialization and jump for parallel
computations. Make function names more meaningful and add new functions
in IO module to store the seeds properly.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-04-25 18:37:58 -03:00
7b0b4e5e51
FORCING: Allow to set characteristic velocity in OH driving.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-04-23 17:34:53 -03:00
dcdcc303eb
FORCING: Fix e2vec NaNs in 2D case, break long lines.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-04-23 16:24:48 -03:00
198d0f5796
FORCING: Fix compilation when MPI=N.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-04-22 22:08:41 -03:00
b8dd0c5b4f
FORCING: Fix compilation when NDIMS = 2.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-04-22 22:03:34 -03:00
ddbb42a90f
FORCING: Implement driving force by Alvelius.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-04-22 21:33:04 -03:00
ae665b24c5
MPITOOLS: Rewrite reduce_sum_complex_array().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-04-22 21:31:39 -03:00
ddd8426d0c
USER_PROBLEM: Use sound speed and plasma-beta to set fields.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-04-20 13:15:22 -03:00
a50a4232ed
INTEGRALS: Add forcing statistics.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-04-20 13:14:35 -03:00
b76eec7022
DRIVER: Print forcing parameters.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-04-20 13:13:20 -03:00
0298adf261
FORCING: Implement Ornstein–Uhlenbeck process driving.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-04-20 13:12:45 -03:00
54b66d5ce1
RANDOM: Implement normal distribution complex number generator.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-04-20 13:10:33 -03:00
29d0acf2ec
EVOLUTION: Correct spelling.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-04-20 13:09:50 -03:00
