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Author SHA1 Message Date
Grzegorz Kowal
0208b3768a INTERPOLATIONS: Add module subroutines profiling. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-02 12:12:16 -02:00
Grzegorz Kowal
f50a070c2c EQUATIONS: Add module subroutines profiling. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-02 12:06:35 -02:00
Grzegorz Kowal
788d328f7a Update years in copyright information. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-02 11:52:59 -02:00
Grzegorz Kowal
861e765906 PROBLEMS: Fix blast problem default parameters. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-02 11:40:58 -02:00
Grzegorz Kowal
e35a54de4a REFINEMENT: Make Intel compiler happy. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-02 11:36:37 -02:00
Grzegorz Kowal
d5c819057c IO: Rewrite write_data(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-27 18:13:12 -02:00
Grzegorz Kowal
f435a44065 IO: Add module subroutines profiling. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-27 18:07:10 -02:00
Grzegorz Kowal
7a4e402c8a BLOCKS, IO, MESH: Rename nchild to nchildren. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-27 17:58:40 -02:00
Grzegorz Kowal
35f3490eb8 REFINEMENT: Return to recommended refinement thresholds. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-27 17:41:27 -02:00
Grzegorz Kowal
acb7eb812d MESH, REFINEMENT: Use statement formatting. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-27 17:41:04 -02:00
Grzegorz Kowal
9d7f4b2196 Makefile: Add missing compilation dependence. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-27 17:37:13 -02:00
Grzegorz Kowal
053e72ead4 MESH: Rewrite check_mesh(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-27 15:17:27 -02:00
Grzegorz Kowal
24b644aa6a MESH: Rewrite prolong_block() and restrict_block(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-27 15:14:31 -02:00
Grzegorz Kowal
c1db19d55f MESH: Rewrite update_mesh(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-27 15:11:03 -02:00
Grzegorz Kowal
c6c1ed97ed MESH: Relocate store_mesh_stats() in the module. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-27 13:17:25 -02:00
Grzegorz Kowal
081eeee471 MESH: Add module subroutines profiling. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-27 13:15:17 -02:00
Grzegorz Kowal
c877cc6b7c MESH: Rewrite redistribute_blocks(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-27 08:02:07 -02:00
Grzegorz Kowal
758c712991 MESH: Rewrite initialization and statistics. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-26 19:51:26 -02:00
Grzegorz Kowal
fa87332225 REFINEMENT: Improve comments. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-26 18:07:23 -02:00
Grzegorz Kowal
7bf2d7f438 REFINEMENT: Add timers to count timing of refinement. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-26 18:04:02 -02:00
Grzegorz Kowal
4c081a84bb DRIVER: Improve the run/save time handling. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-26 17:54:56 -02:00
Grzegorz Kowal
a7eed177c1 REFINEMENT: Rewrite the refined variable selection. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-26 17:32:11 -02:00
Grzegorz Kowal
e19cf534b5 COORDINATES: Fix the formatting again. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-23 23:10:39 -02:00
Grzegorz Kowal
ec5516fae1 COORDINATES: Fix information formatting. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-23 21:52:58 -02:00
Grzegorz Kowal
e1d554aea7 DOMAINS: Do not allocate data blocks in setup_domain(). 
The initial data block structure is fully allocated in generate_mesh()
of module MESH.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-23 21:38:37 -02:00
Grzegorz Kowal
156d8cf1dd MESH: Rewrite generate_mesh(). 
The new version uses the minimum amount of memory (1 data block per
process) with a small sacrifice of the problem initialization speed.
This version fully supports 2D and 3D with and without MPI.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-23 21:35:30 -02:00
Grzegorz Kowal
3052f9aa04 BLOCKS: Replace associate_blocks() with link/unlink_block(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-23 18:19:13 -02:00
Grzegorz Kowal
853618b874 MESH: Replace deallocate_datablock() with remove_datablock(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-23 17:44:36 -02:00
Grzegorz Kowal
42c39c5736 BLOCKS: Rewrite data block allocate/removal subroutines. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-23 17:40:49 -02:00
Grzegorz Kowal
bc095863c7 IO: Revert comment from the last commit. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-23 16:44:56 -02:00
Grzegorz Kowal
3e5f8407f6 IO: Store metablocks only if there are some. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-23 16:44:15 -02:00
Grzegorz Kowal
9517e6ce4c SCHEMES: Implement isothermal MHD HLLD-M Riemann solver. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-20 14:01:33 -02:00
Grzegorz Kowal
3735112d9a SCHEMES: Implement isothermal MHD HLLD Riemann solver. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-20 13:53:45 -02:00
Grzegorz Kowal
7f63bd65be Remove unused preprocessor flags. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-19 19:09:01 -02:00
Grzegorz Kowal
5662c2e4b7 COORDINATES: Fix grammar in initialize_coordinates(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-19 15:03:33 -02:00
Grzegorz Kowal
aaf75ab123 REFINEMENT: Avoid division by zero in second_derivative_error(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-19 14:51:58 -02:00
Grzegorz Kowal
85b92c8090 REFINEMENT: Take absolute values in the error calculation. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-19 14:47:12 -02:00
Grzegorz Kowal
072f234e0f REFINEMENT: Rewrite check_refinement_criterion(). 
Move the second derivative error estimation to another subroutine and
allow to specify which variables should control the refinement.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-19 14:36:37 -02:00
Grzegorz Kowal
b73ce00ddb INTERPOLATIONS: Implement LimO3 reconstruction. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-19 10:38:40 -02:00
Grzegorz Kowal
1d961330e7 BOUNDARIES: Fix group summation in boundary_restrict(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-19 10:26:39 -02:00
Grzegorz Kowal
c1afbb46c8 BOUNDARIES: Group summation in boundary_restrict(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-19 10:25:02 -02:00
Grzegorz Kowal
b21b7f99d1 MESH: Change summation order in restrict_block(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-19 10:18:06 -02:00
Grzegorz Kowal
2a8eee95c0 BOUNDARIES: Rewrite boundary_restrict(). 
Make sure that the summation produces symmetric error.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-19 10:09:08 -02:00
Grzegorz Kowal
70d43808b0 MESH: Rewrite restrict_block(). 
Make sure that the summation symmetry is preserved.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-19 09:48:53 -02:00
Grzegorz Kowal
345787270d IO: Rewrite subroutines to store variables. 
We store now either primitive 'p' or conservative variables 'c' with or
without ghost cells.  The ghost cells storing is determined by
additional runtime parameter 'include_ghosts'.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-19 07:32:40 -02:00
Grzegorz Kowal
6bc5fb67c6 IO: Remove unused references in write_variables_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-18 22:19:46 -02:00
Grzegorz Kowal
38793e5716 IO: Clean up subroutine write_variables_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-18 22:17:49 -02:00
Grzegorz Kowal
c5eb20b2cf SCHEMES: Implement HLLD solver for adiabatic MHD. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-12 16:38:25 -02:00
Grzegorz Kowal
63127e83b1 SCHEMES: Implement HLLC solver for adiabatic MHD. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-12 16:25:30 -02:00
Grzegorz Kowal
360fc7a0c6 PROBLEMS: Rewrite blast problem. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2013-12-12 16:09:47 -02:00