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687 Commits

Author SHA1 Message Date
Grzegorz Kowal
f1bcb4322a IO: Remove unused variable in write_restart_snapshot_xml(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-21 20:29:33 -03:00
Grzegorz Kowal
68e6e95b7b IO: Rewrite write_metablocks_h5() and rename it. 
The new name is store_metablocks_h5().

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-21 19:38:45 -03:00
Grzegorz Kowal
9e87eb0740 IO: Rewrite write_restart_snapshot_h5(). 
Also rename it to store_restart_snapshot_h5().

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-21 17:27:22 -03:00
Grzegorz Kowal
ab20167cb5 IO: Remove old HDF5 write_attribute subroutines. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-21 17:19:05 -03:00
Grzegorz Kowal
9a6d53c2fc IO: Rewrite write_datablocks_h5() and rename to store_datablocks_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-21 17:13:02 -03:00
Grzegorz Kowal
4fe5b5bfc3 IO: Pass data, not pointer to store_dataset_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-21 17:04:41 -03:00
Grzegorz Kowal
10644dc093 IO: Rewrite store_attributes_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-21 12:12:53 -03:00
Grzegorz Kowal
f85fb4004a IO: Add interface for store_attribute_h5. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-21 12:12:07 -03:00
Grzegorz Kowal
fba584904e IO: Handle string and number HDF5 attributes separately. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-21 12:00:49 -03:00
Grzegorz Kowal
c93031cdcf IO: Handle properly strings and scalars in store_attribute_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-20 20:30:25 -03:00
Grzegorz Kowal
20c8946912 IO: Add store_attribute_h5(). 
This is a generic subroutine to store any attribute at any location.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-20 12:22:14 -03:00
Grzegorz Kowal
3b96c3c63d IO: Rewrite store_attributes_h5(). 
It was renamed from write_attributes_h5().

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-20 11:26:17 -03:00
Grzegorz Kowal
17d6e4a73f IO: Rename write_snapshot_h5() to store_snapshot_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-20 10:12:24 -03:00
Grzegorz Kowal
30f9a6c520 IO: Use store_dataset_h5() in store_coordinates_h5(). 
The subroutine write_coordinates_h5() was renamed to store_coordinates_h5().

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-20 10:03:35 -03:00
Grzegorz Kowal
192ddc4d7e IO: Use store_dataset_h5() in store_variables_h5(). 
The subroutine write_variables_h5() was renamed to store_variables_h5().

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-20 09:43:16 -03:00
Grzegorz Kowal
90052f4c62 IO: Add subroutine to store a generic dataset in a HDF5 file. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-20 09:31:20 -03:00
Grzegorz Kowal
de424f2d5d IO: Rewrite write_coordinates_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-20 00:47:09 -03:00
Grzegorz Kowal
c727702e79 IO: Polish a bit write_variables_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-20 00:14:15 -03:00
Grzegorz Kowal
cc6cca3cef IO: Remove option to store with or without ghost zones. 
Snapshots are always stored with the ghost zones.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-20 00:12:10 -03:00
Grzegorz Kowal
69d5ac374b IO: Rewrite write_variables_h5(). 
Store whole blocks with ghost zones.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-20 00:10:19 -03:00
Grzegorz Kowal
0cde0a8d0d IO: Remove selection of the HDF5 snapshot type. 
Only snapshots storing primitive variables are supported.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 23:49:12 -03:00
Grzegorz Kowal
ff74b6828a IO: Remove write_conservative_variables_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 23:46:03 -03:00
Grzegorz Kowal
3987c45cfe IO: Rewrite write_snapshot_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 23:44:04 -03:00
Grzegorz Kowal
ff4f600922 IO: Slightly rewrite the public subroutines. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 21:26:56 -03:00
Grzegorz Kowal
3962bb2550 IO: Use print_message() in Amun-XML subroutines. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 20:07:28 -03:00
Grzegorz Kowal
a296ebc3bd HASH: Add subroutine to check hash of the input data. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 19:49:40 -03:00
Grzegorz Kowal
d03b94da6f BOUNDARIES: Use print_message(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 19:11:04 -03:00
Grzegorz Kowal
b0dee04366 INTERPOLATIONS: Use print_message(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 19:04:43 -03:00
Grzegorz Kowal
7f77af6c98 MPITOOLS: Use print_message(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 18:36:22 -03:00
Grzegorz Kowal
cc38605577 COORDINATES: Use print_message(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 18:11:43 -03:00
Grzegorz Kowal
6afc2c5311 FORCING: Use print_message(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 17:58:40 -03:00
Grzegorz Kowal
546bb5eb0d EVOLUTION: Use print_message(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 17:53:14 -03:00
Grzegorz Kowal
19a5b56936 TIMERS: Use print_message(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 17:37:21 -03:00
Grzegorz Kowal
e7ec7a6ea9 WORKSPACE: Use print_message(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 17:31:33 -03:00
Grzegorz Kowal
b556b396c3 TIMERS: Remove unnecessary comments. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 13:17:04 -03:00
Grzegorz Kowal
2d7a4b0d3c COMPRESSION: Remove unnecessary comments. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 13:13:43 -03:00
Grzegorz Kowal
cbc18b97a7 GRAVITY: Slightly rewrite the module. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 13:11:39 -03:00
Grzegorz Kowal
b289da40f2 CONTANTS: Remove unnecessary comments. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 13:06:16 -03:00
Grzegorz Kowal
20cfd3a868 MESH: Use print_message(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 13:03:25 -03:00
Grzegorz Kowal
542a8f978a REFINEMENT: Use print_message(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 12:44:56 -03:00
Grzegorz Kowal
d961a080ce SOURCES: Use print_message(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 12:39:36 -03:00
Grzegorz Kowal
42d60bdd0e STATISTICS: Use print_message(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 12:37:18 -03:00
Grzegorz Kowal
ed59b64960 EQUATIONS: Use print_message(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 12:33:47 -03:00
Grzegorz Kowal
1f2784c1ad AMUN: Fix the execution timings alignment again. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 11:26:25 -03:00
Grzegorz Kowal
c4c0737661 REFINEMENT: Print refinement criterion limits as ranges. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 11:10:38 -03:00
Grzegorz Kowal
cd25d670fc BOUNDARIES: Print boundaries as ranges. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 11:08:23 -03:00
Grzegorz Kowal
b90b252dea COORDINATES: Print domain bounds as ranges. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 11:04:37 -03:00
Grzegorz Kowal
43e60f90d1 HELPERS: Add print_parameter() for parameter ranges. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 11:01:40 -03:00
Grzegorz Kowal
b3bbd9afb3 AMUN: Fix a cut in the final execution timings. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 10:30:20 -03:00
Grzegorz Kowal
bd5fde97f6 HASH, IO: Properly handle the digest type. 
Allow to select the digest type by the user. For the restart files we
always use the XXH64 hash.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 10:07:46 -03:00