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Author SHA1 Message Date
Grzegorz Kowal
c93031cdcf IO: Handle properly strings and scalars in store_attribute_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-20 20:30:25 -03:00
Grzegorz Kowal
20c8946912 IO: Add store_attribute_h5(). 
This is a generic subroutine to store any attribute at any location.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-20 12:22:14 -03:00
Grzegorz Kowal
3b96c3c63d IO: Rewrite store_attributes_h5(). 
It was renamed from write_attributes_h5().

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-20 11:26:17 -03:00
Grzegorz Kowal
17d6e4a73f IO: Rename write_snapshot_h5() to store_snapshot_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-20 10:12:24 -03:00
Grzegorz Kowal
30f9a6c520 IO: Use store_dataset_h5() in store_coordinates_h5(). 
The subroutine write_coordinates_h5() was renamed to store_coordinates_h5().

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-20 10:03:35 -03:00
Grzegorz Kowal
192ddc4d7e IO: Use store_dataset_h5() in store_variables_h5(). 
The subroutine write_variables_h5() was renamed to store_variables_h5().

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-20 09:43:16 -03:00
Grzegorz Kowal
90052f4c62 IO: Add subroutine to store a generic dataset in a HDF5 file. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-20 09:31:20 -03:00
Grzegorz Kowal
de424f2d5d IO: Rewrite write_coordinates_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-20 00:47:09 -03:00
Grzegorz Kowal
c727702e79 IO: Polish a bit write_variables_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-20 00:14:15 -03:00
Grzegorz Kowal
cc6cca3cef IO: Remove option to store with or without ghost zones. 
Snapshots are always stored with the ghost zones.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-20 00:12:10 -03:00
Grzegorz Kowal
69d5ac374b IO: Rewrite write_variables_h5(). 
Store whole blocks with ghost zones.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-20 00:10:19 -03:00
Grzegorz Kowal
0cde0a8d0d IO: Remove selection of the HDF5 snapshot type. 
Only snapshots storing primitive variables are supported.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 23:49:12 -03:00
Grzegorz Kowal
ff74b6828a IO: Remove write_conservative_variables_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 23:46:03 -03:00
Grzegorz Kowal
3987c45cfe IO: Rewrite write_snapshot_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 23:44:04 -03:00
Grzegorz Kowal
ff4f600922 IO: Slightly rewrite the public subroutines. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 21:26:56 -03:00
Grzegorz Kowal
3962bb2550 IO: Use print_message() in Amun-XML subroutines. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 20:07:28 -03:00
Grzegorz Kowal
a296ebc3bd HASH: Add subroutine to check hash of the input data. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 19:49:40 -03:00
Grzegorz Kowal
d03b94da6f BOUNDARIES: Use print_message(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 19:11:04 -03:00
Grzegorz Kowal
b0dee04366 INTERPOLATIONS: Use print_message(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 19:04:43 -03:00
Grzegorz Kowal
7f77af6c98 MPITOOLS: Use print_message(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 18:36:22 -03:00
Grzegorz Kowal
cc38605577 COORDINATES: Use print_message(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 18:11:43 -03:00
Grzegorz Kowal
6afc2c5311 FORCING: Use print_message(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 17:58:40 -03:00
Grzegorz Kowal
546bb5eb0d EVOLUTION: Use print_message(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 17:53:14 -03:00
Grzegorz Kowal
19a5b56936 TIMERS: Use print_message(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 17:37:21 -03:00
Grzegorz Kowal
e7ec7a6ea9 WORKSPACE: Use print_message(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 17:31:33 -03:00
Grzegorz Kowal
b556b396c3 TIMERS: Remove unnecessary comments. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 13:17:04 -03:00
Grzegorz Kowal
2d7a4b0d3c COMPRESSION: Remove unnecessary comments. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 13:13:43 -03:00
Grzegorz Kowal
cbc18b97a7 GRAVITY: Slightly rewrite the module. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 13:11:39 -03:00
Grzegorz Kowal
b289da40f2 CONTANTS: Remove unnecessary comments. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 13:06:16 -03:00
Grzegorz Kowal
20cfd3a868 MESH: Use print_message(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 13:03:25 -03:00
Grzegorz Kowal
542a8f978a REFINEMENT: Use print_message(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 12:44:56 -03:00
Grzegorz Kowal
d961a080ce SOURCES: Use print_message(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 12:39:36 -03:00
Grzegorz Kowal
42d60bdd0e STATISTICS: Use print_message(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 12:37:18 -03:00
Grzegorz Kowal
ed59b64960 EQUATIONS: Use print_message(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 12:33:47 -03:00
Grzegorz Kowal
1f2784c1ad AMUN: Fix the execution timings alignment again. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 11:26:25 -03:00
Grzegorz Kowal
c4c0737661 REFINEMENT: Print refinement criterion limits as ranges. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 11:10:38 -03:00
Grzegorz Kowal
cd25d670fc BOUNDARIES: Print boundaries as ranges. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 11:08:23 -03:00
Grzegorz Kowal
b90b252dea COORDINATES: Print domain bounds as ranges. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 11:04:37 -03:00
Grzegorz Kowal
43e60f90d1 HELPERS: Add print_parameter() for parameter ranges. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 11:01:40 -03:00
Grzegorz Kowal
b3bbd9afb3 AMUN: Fix a cut in the final execution timings. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 10:30:20 -03:00
Grzegorz Kowal
bd5fde97f6 HASH, IO: Properly handle the digest type. 
Allow to select the digest type by the user. For the restart files we
always use the XXH64 hash.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 10:07:46 -03:00
Grzegorz Kowal
e92db065ca BUILD: Add support for XXHASH in regular make build. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-19 08:44:01 -03:00
Grzegorz Kowal
8eca13d556 IO: Do not set hash type if libxxhash is not used. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-18 23:20:50 -03:00
Grzegorz Kowal
a10d7d5499 CMAKE, HASH, IO: Detect and use the system libxxhash. 
If it is available, allow to choose between XXH64 (default) and XXH3
hash algorithms provided by the library XXHASH.

If it is not available, the internal slower implementation is used.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-18 23:15:51 -03:00
Grzegorz Kowal
17d4567d13 SYSTEM: Make store_system() private. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-18 17:54:26 -03:00
Grzegorz Kowal
51680fe261 SYSTEM: Use print_message(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-18 17:52:29 -03:00
Grzegorz Kowal
cc8f3b11ab AMUN: Use print_message(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-18 17:36:18 -03:00
Grzegorz Kowal
51e0b6dbd4 HELPERS: Add print_message(). 
This subroutine accepts two arguments, the location and the message. It
simply prints the message indicating the location to the standard error
output.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-18 17:24:21 -03:00
Grzegorz Kowal
be1378d851 AMUN: Rewrite printing of the execution times. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-18 17:18:58 -03:00
Grzegorz Kowal
f89d5b136a SYSTEM: Rename module file to system.F90. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-18 16:50:04 -03:00