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61 Commits

Author SHA1 Message Date
Grzegorz Kowal
38a205e1c7 PYTHON: Update installation script. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2020-08-13 15:52:18 -03:00
Grzegorz Kowal
d048159798 COMPRESSION: Add LZMA/XZ compression format. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2020-08-13 15:42:07 -03:00
Grzegorz Kowal
f9b6dd47e9 COMPRESSION: Use LZ4 frame for compatibility with command lz4. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2020-08-13 09:17:09 -03:00
Grzegorz Kowal
eb7c8dbd76 COMPRESSION, PYTHON: Add support for LZ4 compression. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2020-08-11 15:28:20 -03:00
Grzegorz Kowal
575c626b0a PYTHON: Add compression support to AmunPy module. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2020-08-11 12:14:39 -03:00
Grzegorz Kowal
7495681330 PYTHON: Add electric field components and its magnitude. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2020-07-20 16:26:21 -03:00
Grzegorz Kowal
5bd541333c PYTHON: Add vorticity and current density components to AmunXML. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2020-07-20 16:11:49 -03:00
Grzegorz Kowal
84a3ce1572 PYTHON: Change formatting to use .format() in AmunXML class. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2020-07-17 16:41:50 -03:00
Grzegorz Kowal
ad3d9eec93 PYTHON: Add simple progress to AmunXML.dataset(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2020-07-17 16:37:04 -03:00
Grzegorz Kowal
4b9aba7d75 PYTHON: Fix reading datasedt for non-square/non-cube domain. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2020-05-13 22:06:53 -03:00
Grzegorz Kowal
7faf27e3b9 PYTHON: Use the maximum used level instead of maxlev. 
This reduces the resolution and memory usage if parameter maxlev is
actually larger than the maximu used level.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2020-05-12 14:51:37 -03:00
Grzegorz Kowal
ac7697158a PYTHON: Fix extras in setup.py. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2020-05-12 07:41:15 -03:00
Grzegorz Kowal
425bcc2f17 PYTHON: Verify binary data hashes if python-xxhash is available. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2020-05-12 07:31:12 -03:00
Grzegorz Kowal
3dce6e683f PYTHON: Some fixes for 3D runs. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2020-05-01 21:25:43 -03:00
Grzegorz Kowal
e86b9f7339 PYTHON: Add function to read datablocks. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2020-05-01 15:02:44 -03:00
Grzegorz Kowal
084750da46 PYTHON: Handle properly snapshot chunks with no datablocks. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2020-05-01 13:18:29 -03:00
Grzegorz Kowal
6978aee6ef PYTHON: Add class to handle XML-binary snapshots. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2020-05-01 12:53:23 -03:00
Grzegorz Kowal
1896966854 Update copyright year. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2020-03-03 15:40:53 -03:00
Grzegorz Kowal
7cf6bd34b0 PYTHON: Rename amun to amunpy. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-11-27 10:28:49 -03:00
Grzegorz Kowal
0f9a6c222d PYTHON: Add optional interpolation to datasets. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-11-27 10:27:28 -03:00
Grzegorz Kowal
d7f4acdd9c PYTHON: Add setup.py to facilitate package installation. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-11-22 18:12:43 -03:00
Grzegorz Kowal
802eb9234f PYTHON: Rewrite amun_dataset(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-11-22 18:09:47 -03:00
Grzegorz Kowal
4f809ce96d PYTHON: Rewrite amun_coordinate(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-11-22 17:48:13 -03:00
Grzegorz Kowal
ed8e606d15 PYTHON: Rewrite amun_attribute(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-11-22 17:46:10 -03:00
Grzegorz Kowal
325208559e PYTHON: Rewrite amun_compatible(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-11-22 17:39:49 -03:00
Grzegorz Kowal
f0ca778eb6 PYTHON: Fix subroutines to read integrals. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-03-11 11:53:06 -03:00
Grzegorz Kowal
9a53103f14 PYTHON: Determine the maximum level from the blocks. 
In some situations, the block refinement didn't reach the maximum level
available. There is no need to rescale all block to this level then.
Also the memory consumption in such case is significantly reduced.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-23 08:51:07 -03:00
Grzegorz Kowal
76d7cf8826 IO, DRIVER, PYTHON: Fix domain block dimensions with job restart. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-21 15:58:38 -03:00
Grzegorz Kowal
0ceca17a95 PYTHON: Add refinement 'level' to be read as dataset. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-18 11:27:47 -03:00
Grzegorz Kowal
81b94a8009 PYTHON: Remove wrong condition in amun_compatible(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-18 11:11:16 -03:00
Grzegorz Kowal
001748ff92 PYTHON: Support older snapshots with 'rdims'. 
The new snapshots store 'domain_base_dims' instead.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-18 11:04:55 -03:00
Grzegorz Kowal
eccc933c20 PYTHON: Check if the shrink parameter is correct. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-18 10:53:47 -03:00
Grzegorz Kowal
e16fd94df7 PYTHON: Generate block dimensions using ndims and ncells. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-05 12:04:48 -02:00
Grzegorz Kowal
d4059b8075 PYTHON: Read 'domain_base_dims' instead of 'rdims'. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-02-03 22:33:14 -02:00
Grzegorz Kowal
a489837d63 Update copyright info. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2019-01-28 09:06:57 -02:00
Grzegorz Kowal
a9123e466a PYTHON: Make sure indices are integers in rebin(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2018-11-07 12:10:28 -02:00
Grzegorz Kowal
5b28e11182 PYTHON: Rewrite subroutine amun_dataset(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2018-11-06 12:45:07 -02:00
Grzegorz Kowal
43e5b0b5f2 PYTHON: Rename amun_coordinates() to amun_coordinate(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2018-11-06 12:35:30 -02:00
Grzegorz Kowal
5fa42b71cc PYTHON: Reorganize amun.py. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2018-11-06 12:34:39 -02:00
Grzegorz Kowal
8eb5a2550a PYTHON: Add subroutine amun_coordinates() to retrive coordinate items. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2018-11-06 12:08:53 -02:00
Grzegorz Kowal
d8b7e73b9f PYTHON: Rewrite amun_attribute(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2018-11-06 12:02:56 -02:00
Grzegorz Kowal
25bbb78c63 PYTHON: Use amun_compatible() in all subroutines. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2018-11-06 11:37:29 -02:00
Grzegorz Kowal
cbe94a21b6 PYTHON: Add amun_compatible() function. 
This function returns True or False if the file is an HDF5 file
written in the AMUN code format.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2018-11-06 11:34:02 -02:00
Grzegorz Kowal
444b78450e PYTHON: Add two subroutines to read integral (.dat) files. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2018-03-31 12:01:40 -03:00
Grzegorz Kowal
d85d30ea28 PYTHON: Simplify variable conditions for temperature. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2018-02-01 10:32:09 -02:00
Grzegorz Kowal
ee913e1a10 PYTHON: Add shrink parameter to amun_dataset(). 
The shrink parameter is an integer factor which is the power of 2 in the
range from 1 to the minimum dimension of the block size. For example, if
shrink = 2 than the output array will be halfed in each direction.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2018-01-30 17:28:20 -02:00
Grzegorz Kowal
4602835b1c PYTHON: Add the magnitude of current density to derived datasets. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2018-01-18 11:05:38 -02:00
Grzegorz Kowal
a9e15906d4 PYTHON: Add vorticity magnitude to derived datasets. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2018-01-18 11:02:58 -02:00
Grzegorz Kowal
bfacf336eb PYTHON: Add the divergence of magnetic field to derived datasets. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2018-01-18 10:51:06 -02:00
Grzegorz Kowal
24310ff8e2 PYTHON: Add the divergence of velocity to derived datasets. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2018-01-18 10:49:31 -02:00