2262 Commits

Author SHA1 Message Date
5886c2039a PYTHON: Update adiabatic index name.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-16 17:00:50 -03:00
2327e6ffa5 PROBLEMS: Update parameters for sound speed and adiabatic index.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-16 16:49:24 -03:00
6bf3afcf0b EQUATIONS: Rename parameter 'csnd' to 'sound_speed'.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-16 16:46:27 -03:00
fda340b21b EQUATIONS: Rename gamma to adiabatic_index.
Keyword 'gamma' is reserved in Fortran for calculating Gamma function.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-16 16:41:28 -03:00
14635cb208 CMake: Update home page.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-15 16:25:12 -03:00
b8e71a4fb0 INTERPOLATIONS: Remove unused variables in 2D case.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-15 01:33:43 -03:00
8f33e4aeb5 EQUATIONS: Remove unused variables for 2D case.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-15 01:28:28 -03:00
17395086fb REFINEMENT: Remove unused variables for 2D case.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-15 01:27:08 -03:00
d05e3062fc FORCING: Remove unused variables for 2D case.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-15 01:25:31 -03:00
02b2d5d1bd CMAKE: Do not warn about dummy arguments.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-15 01:14:04 -03:00
9e507b283c SOURCES: Remove unused variable for 2D case.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-15 01:12:41 -03:00
e75089ed19 INTERPOLATIONS: Check correctness of ngp just after reading it.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-15 01:09:52 -03:00
5a04b17ab3 MPITOOLS: Fix compilation without MPI.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-14 21:54:46 -03:00
c15378bddd MPITOOLS: Rewrite MPI support using Fortran 2008 interface.
Use procedure interfaces, remove unused variables, etc.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-14 19:40:10 -03:00
701bb6618b Merge branch 'revert-9b7fe356' into 'master'
Revert "Update .gitlab-ci.yml to use .pre stage."

See merge request gkowal/amun-code!1
2020-08-14 13:44:48 +00:00
8108a445a3 Revert "Update .gitlab-ci.yml to use .pre stage."
This reverts commit 9b7fe356505ddd275a45ca64395da0fa9544941f
2020-08-14 13:42:18 +00:00
9b7fe35650 Update .gitlab-ci.yml to use .pre stage. 2020-08-14 13:39:58 +00:00
6833a0d741 Update .gitlab-ci.yml 2020-08-14 13:27:08 +00:00
2e360eef31 CI/CD: Add building with cmake to piplines.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-14 10:12:43 -03:00
a1b47ab1e1 README: Update features and add CMake compilation steps.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-13 16:35:39 -03:00
65f882fe99 MAKEFILE: Update files for compression support in XML+binary format.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-13 16:15:05 -03:00
38a205e1c7 PYTHON: Update installation script.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-13 15:52:18 -03:00
d048159798 COMPRESSION: Add LZMA/XZ compression format.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-13 15:42:07 -03:00
f9b6dd47e9 COMPRESSION: Use LZ4 frame for compatibility with command lz4.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-13 09:17:09 -03:00
b05f186765 COMPRESSION: Use allocated buffer for ZSTD compression.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-11 15:36:20 -03:00
eb7c8dbd76 COMPRESSION, PYTHON: Add support for LZ4 compression.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-11 15:28:20 -03:00
2012a5eb92 IO: Remove compression suffix if the file is not compressed.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-11 15:01:26 -03:00
575c626b0a PYTHON: Add compression support to AmunPy module.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-11 12:14:39 -03:00
af4da9444a IO: Store compression format in binary file attributes.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-11 12:00:42 -03:00
0006459521 IO: Remove debug info.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-11 09:32:51 -03:00
352f7a7c1b IO: Fix file name in write_binary_xml(), when compression is inefficient.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-10 20:46:20 -03:00
c209000fb2 IO: Fix binary restart snapshot storing when the compression is on.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-10 20:29:25 -03:00
e0a4f2a4a5 IO: Print compression format and level of XML+binary files.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-10 16:52:16 -03:00
053392e762 COMPRESSION: Add Zstandard compression support.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-10 16:48:31 -03:00
8b475b880b IO: Add storing compressed fields in write_snapshot_xml().
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-10 16:32:42 -03:00
36996e6f76 IO: Add compressed field to the XML file attribute.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-10 16:22:37 -03:00
1d154ab492 IO: Support compression in write_binary_xml().
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-10 16:03:46 -03:00
08b7e81f6a COMPRESSION, IO: Initialize compression in initialize_io().
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-10 15:34:20 -03:00
ab3b5d6877 COMPRESSION: Add module to handle data compression.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-10 15:12:40 -03:00
d3e7ab7c5d IO: Fix job restart after with new XML structure for binary files.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-10 11:51:23 -03:00
42951cd48c IO: Use new XML structure for binary files in write_restart_snapshot_xml().
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-10 10:55:06 -03:00
7867d9d062 IO: Use new XML structure for binary files in write_snapshot_xml().
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-10 10:32:17 -03:00
220c6028b1 IO: Add subroutine to write binary file attribute.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-10 10:23:36 -03:00
97887b2ad6 IO: Return the number of bytes written to file from write_binary_xml().
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-10 10:09:59 -03:00
35f3e3f2eb IO: Add binary file extension before write_binary_xml().
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-10 10:04:05 -03:00
c7daa08545 IO: Slightly reorganize write_snapshot_xml().
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-08 23:19:09 -03:00
d368e7f863 IO: Slightly reorganize write_restart_snapshot_xml().
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-08 23:15:56 -03:00
c51ce6cd5a IO: Use write_binary_xml() in write_restart_snapshot_xml().
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-08 22:58:11 -03:00
e623a3a001 IO: Use write_binary_xml() in write_snapshot_xml().
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-08 22:45:18 -03:00
34d5f75315 IO: Create a subroutine to store binary data and return its digest.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-08-08 22:36:01 -03:00