gkowal/amun-code
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity
1,019 Commits 5 Branches 0 Tags
Commit Graph

1019 Commits

This Branch
This Branch
All Branches
Author SHA1 Message Date
Grzegorz Kowal
242abc4ea3 BLOCKS: Rewrite append_datablock() and remove_datablock(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-15 11:27:03 -02:00
Grzegorz Kowal
3081ef8b04 BLOCKS: Rewrite append_metablock() and add remove_metablock(). 
These subroutines not only allocate/deallocate meta blocks, but also
takes care about the appending or removal of the blocks to or from the
meta block list.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-15 11:10:27 -02:00
Grzegorz Kowal
cddf77613e BLOCKS: Rewrite initialize_blocks() and finalize_blocks(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-15 10:33:37 -02:00
Grzegorz Kowal
55545be6f5 BLOCKS: Rewrite comments of module structures and variables. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-15 09:32:58 -02:00
Grzegorz Kowal
0cc5be4249 BLOCKS: Add module subroutines profiling. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-15 08:42:50 -02:00
Grzegorz Kowal
2983ba0580 INTEGRALS: Rewrite module. Add profiling. 
Now, after restarting a job, a new integrals file is created.  Integrals
are stored after interval controlable by the parameter
'integrals_interval'. Also profiling has been added to measure time
spent on the integrals calculation.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-10 12:42:18 -02:00
Grzegorz Kowal
71418b4041 ERROR: Update module description and correct mispellings. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-10 11:34:51 -02:00
Grzegorz Kowal
036b8fb6e8 CONSTANTS: Correct mispelling. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-10 11:32:27 -02:00
Grzegorz Kowal
23c93e55a9 CONSTANTS: Update module description. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-10 11:31:29 -02:00
Grzegorz Kowal
2ad980142b ERROR: Rewrite module a bit and the way messages are printed. 
Subroutine print_error() does not stop the execution anymore.  This
should be controlled by the code.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-10 11:27:39 -02:00
Grzegorz Kowal
1e7cb2a72c DRIVER: Store mesh statistics after restart as well. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-09 12:50:05 -02:00
Grzegorz Kowal
15d98770d0 IO: Return iret value from write_restart_snapshot_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-09 12:42:33 -02:00
Grzegorz Kowal
16dcd443f3 IO: Make Intel Fortran compiler happy. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-09 12:39:57 -02:00
Grzegorz Kowal
6ef8be3a0d IO: Remove read_restart_params_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-09 12:31:15 -02:00
Grzegorz Kowal
a992c1ac3b IO: Rename dtout to hsnap. Print more snapshot info. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-09 12:29:32 -02:00
Grzegorz Kowal
08353c6fca IO: Implement restart snapshot intervals. 
Using the runtime parameter 'restart_interval', which is a value
expressed in hours, we can control how often the restart snapshot is
written.  This is useful for long runs if we want to reduce the risk of
loosing too many processor hours.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-09 12:13:26 -02:00
Grzegorz Kowal
b196256479 IO: Modify the way the job restart is handled by the code. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-09 11:22:23 -02:00
Grzegorz Kowal
2db9d31276 IO: Rename nres to nrest. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-09 10:37:47 -02:00
Grzegorz Kowal
2a0771c462 IO: Describe module parameters. Rename nrest to irest. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-09 10:36:08 -02:00
Grzegorz Kowal
6026039256 IO: Rename write_data_h5() to write_snapshot_h5() and rewrite. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-09 10:15:40 -02:00
Grzegorz Kowal
d6ecf7afcb IO: Add a new subroutine write_restart_snapshot_h5(). 
This subroutine stores restart snapshots in the HDF5 format files.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-09 10:01:07 -02:00
Grzegorz Kowal
cfb20624e7 IO: Update error messages in read_restart_snapshot_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-09 09:43:50 -02:00
Grzegorz Kowal
64cd70413f IO: Rename read_data_h5() to read_restart_snapshot_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-09 09:32:41 -02:00
Grzegorz Kowal
578ddbf7ea IO: Rename public subroutines *_data() to *_snapshot(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-09 09:29:22 -02:00
Grzegorz Kowal
c01e0760fe DRIVER, IO: Implement precise snapshot times. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-08 18:07:54 -02:00
Grzegorz Kowal
8009d6ff5c EVOLUTION: Rename n and t to step and time, respectively. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-08 17:34:15 -02:00
Grzegorz Kowal
f08b917208 DRIVER: Increase nrun for the restarted jobs. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-08 17:08:08 -02:00
Grzegorz Kowal
3443dc18aa IO: Rewrite subroutine read_data_h5(). 
The new version of subroutine read_data_h5() allows for restart a job
more efficiently with flexibility of changing the number of used
processes, both smaller or larger than the number of restart files.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-08 16:53:26 -02:00
Grzegorz Kowal
a366a9cede MESH: Send primitive variables in redistribute_blocks() too. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-08 15:51:31 -02:00
Grzegorz Kowal
7f585f4ffe IO: Change order of subroutines. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-08 14:36:16 -02:00
Grzegorz Kowal
cb6a5c11e4 IO: Rename ncpu, ncpus to nproc, nprocs. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-08 14:27:08 -02:00
Grzegorz Kowal
16bb2eb658 IO: Rewrite subroutine read_datablocks_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-08 13:05:28 -02:00
Grzegorz Kowal
1a34a29d79 IO: Rewrite subroutine write_datablocks_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-08 12:52:37 -02:00
Grzegorz Kowal
63c789e174 IO: Change public subroutines order. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-08 11:41:48 -02:00
Grzegorz Kowal
5de70229d5 IO: Define private and public subroutines. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-08 11:40:06 -02:00
Grzegorz Kowal
4fd23fb32b IO: Rename restart_job() to read_restart_data(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-08 11:38:18 -02:00
Grzegorz Kowal
75f756238b DRIVER: Correct loop termination conditions. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-08 11:14:50 -02:00
Grzegorz Kowal
39e80d3e55 MESH: Fix coverage and efficiency factors calculation. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-07 21:59:13 -02:00
Grzegorz Kowal
de9316ccc2 BOUNDARIES: Remove subroutine update_corners(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-07 14:33:26 -02:00
Grzegorz Kowal
9004026e33 BOUNDARIES: Fix alignment in correct_flux(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-07 14:30:25 -02:00
Grzegorz Kowal
4625ddd181 BOUNDARIES: Rewrite correct_flux(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-07 13:30:20 -02:00
Grzegorz Kowal
3fc5cdc346 BOUNDARIES: Rewrite boundary_prolong(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-07 13:18:14 -02:00
Grzegorz Kowal
f795ec68dd BOUNDARIES: Rewrite boundary_restrict(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-07 12:48:37 -02:00
Grzegorz Kowal
97d5116aa5 BOUNDARIES: Rewrite boundary_copy(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-07 12:44:53 -02:00
Grzegorz Kowal
daefdc39e7 BOUNDARIES: Rewrite boundary_specific(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-07 12:39:45 -02:00
Grzegorz Kowal
1a372b04ec BOUNDARIES: Correct spellings. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-07 12:29:57 -02:00
Grzegorz Kowal
df72d256eb BOUNDARIES: Rewrite prolong_boundaries(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-07 12:26:21 -02:00
Grzegorz Kowal
da136a832e BOUNDARIES: Rewrite restrict_boundaries(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-07 11:53:53 -02:00
Grzegorz Kowal
a108108822 BOUNDARIES: Replace nprocs-1 with npmax. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-07 10:59:18 -02:00
Grzegorz Kowal
a1fcff9a66 BOUNDARIES: Rewrite copy_boundaries(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-07 10:56:22 -02:00