b94f8584d3
PYTHON: Update package version.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-03-15 15:58:31 -03:00
bd481a2e91
PYTHON: Update version to 0.6.2.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-03-15 15:56:06 -03:00
fc5a846af3
PYTHON: Add amun_dataset_vtk() function.
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This function works only with HDF5 files and its purpose is to convert
the dataset and store it as the OverlappedAMR VTK files, which can be
read by ParaView.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-03-15 15:54:26 -03:00
a2c3666ef2
PYTHON: Add AmunXML's function to store data as AMR VTK files.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-03-15 12:13:36 -03:00
2f83136ed9
PYTHON: Add submodule to write VTK files.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-03-15 12:12:34 -03:00
0e1bc57c9c
PYTHON: Add submodule to handle octree of AMR blocks.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-03-15 11:49:09 -03:00
7fd7575bf4
PYTHON: Initialize meta block indices and bounds.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-03-15 11:17:05 -03:00
8d8be029c4
PYTHON: Remove unnecessary import from AmunXML.dataset().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-03-15 10:29:44 -03:00
f120808f45
PYTHON: Reorganize AmunXML.dataset().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-03-15 10:27:02 -03:00
439eb4ea67
PYTHON: Reduce the number of variables in AmunXML.dataset().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-03-15 10:21:53 -03:00
4dfd7a657f
PYTHON: Put dataset reading in a private subroutine.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-03-15 10:13:53 -03:00
d66811c41d
PYTHON: Initialize levels and coordinates of meta blocks.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-03-15 10:02:21 -03:00
ec9acf3c12
PYTHON: Make read_binary_data() private.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-03-15 09:39:12 -03:00
7ee5cde0a8
PYTHON: Make read_binary_meta() private.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-03-15 09:37:52 -03:00
9d24d7b469
PYTHON: Make check_digest() private.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-03-15 09:37:11 -03:00
f8a7039a94
PYTHON: Split module into submodules.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-03-15 09:07:48 -03:00
c1c68c3516
PYTHON: Reorganize AmunPy package structure.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-03-14 21:47:34 -03:00
797deb9ae0
PYTHON: Move AmunPy to separate subdirectory.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-03-14 19:27:55 -03:00
118d643524
PARAMETERS: Initialize status flag in read_parameters().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-02-25 20:05:27 -03:00
3cbb8da21e
EVOLUTION: Add missing update_variables() in SSPRK(m,2).
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-02-05 16:16:26 -03:00
18a25d3775
EVOLUTION: Make sure the system is always consistent for SSPRK(m,3).
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-02-05 16:15:43 -03:00
ce1a9739cc
README: Add requirements for compression libraries.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-02-05 10:17:07 -03:00
5728c1cab5
IO: Use stream access to store/read binary files.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-02-04 22:26:15 -03:00
fa8cfa8f8f
COMPRESSION: Remove the 2GiB limit in compress().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-02-04 17:40:17 -03:00
3f0bd444c8
HASH: Remove the 2GiB limit for xxh64().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-02-04 17:37:53 -03:00
ad7f1da604
CMake: -ftree-vectorize seems to be problematic in some cases.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-02-04 17:36:37 -03:00
3d16d5c13d
Update copyrights.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-02-04 17:35:04 -03:00
8c0e6dea29
PYTHON: Add argument 'maxlev' to function dataset().
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This argument is an alternative way to reduce the resolution of the
data. It specifies that the output cube resolution should be
corresponding to the 'maxlev' refinement level.
If the maximum level of simulation changes during the evolution, the
parameter allows to read all snapshots with the same output resolution.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-01-05 10:48:00 -03:00
575bcc1d27
PYTHON: Move shrink and interpolation arguments to dataset().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-01-05 10:17:44 -03:00
b3c51569f1
PYTHON: Correct the sign of the electric field components.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-12-30 22:10:07 -03:00
ca1cc9fb31
COORDINATES: Add indices for nb-1, nb+1, ne-1, ne+1.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-12-29 17:42:20 -03:00
4833067bea
SCHEMES: Improve detection of numerical degeneracies in HLLD solvers.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-12-27 11:37:07 -03:00
052ce7e05a
PYTHON: Implement reading subvolume of the datasets in AmunXML.
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The subvolume to be read is controlled by additional parameter 'extent'
passed to function dataset(). The syntax of this parameters is
extent=(xmin, xmax, ymin, ymax, zmin, zmax)
for 3D snapshots or
extent=(xmin, xmax, ymin, ymax)
for 2D snapshots.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-12-20 22:49:14 -03:00
9ae09e2c46
PYTHON: Fix block counter for 'divv' and 'divb' in AmunXML.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-12-02 17:43:37 -03:00
37fdafd28d
EVOLUTION: Fix unphysical cells after applying shapes.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-11-26 10:50:49 -03:00
f453d86bc4
PYTHON: Add logarithm of density and pressure to AmunXML.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-11-26 09:52:28 -03:00
2dfcecf789
PYTHON: Fix calculation of temperature in class AmunXML.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-11-26 09:48:46 -03:00
7fdac2f584
SCHEMES: Make HD ROE solvers numerically symmetric.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-11-17 17:52:22 -03:00
56fb625e59
SCHEMES: Make adiabatic MHD ROE solver numerically symmetric.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-11-17 17:49:05 -03:00
52747633f8
SCHEMES: Make isothermal MHD ROE solver numerically symmetric.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-11-17 17:27:37 -03:00
c677e18ecf
INTEGRALS: Add subroutine to flush and sync specific IO unit.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-11-12 07:22:49 -03:00
b2f2b35d0b
INTEGRALS: Flush integral buffers.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-11-12 06:33:56 -03:00
0b1da7d42d
INTERPOLATIONS: Enable positivity fix by default.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-11-11 08:49:27 -03:00
0b6797ede7
INTERPOLATIONS: OCMP7 method requires 6 ghost cells.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-11-10 14:54:17 -03:00
16a7842fc0
SCHEMES: Make adiabatic MHD HLLD solver numerically symmetric.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-11-10 12:04:03 -03:00
ff7ba2e015
SCHEMES: Make isothermal MHD HLLD solver numerically symmetric.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-11-10 12:03:03 -03:00
44b990644d
SCHEMES: Make MHD HLLC solver numerically symmetric.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-11-10 12:02:16 -03:00
87e748feb7
SCHEMES: Make HD HLLC solver numerically symmetric.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-11-10 12:01:28 -03:00
4a4c363660
SCHEMES: Make HLL solver numerically symmetric.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-11-10 11:58:17 -03:00
f85c119043
PROBLEMS: Slightly rewrite pressures in tearing problem.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2020-11-10 10:13:31 -03:00
