192ddc4d7e
IO: Use store_dataset_h5() in store_variables_h5().
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The subroutine write_variables_h5() was renamed to store_variables_h5().
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-20 09:43:16 -03:00
90052f4c62
IO: Add subroutine to store a generic dataset in a HDF5 file.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-20 09:31:20 -03:00
de424f2d5d
IO: Rewrite write_coordinates_h5().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-20 00:47:09 -03:00
c727702e79
IO: Polish a bit write_variables_h5().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-20 00:14:15 -03:00
cc6cca3cef
IO: Remove option to store with or without ghost zones.
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Snapshots are always stored with the ghost zones.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-20 00:12:10 -03:00
69d5ac374b
IO: Rewrite write_variables_h5().
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Store whole blocks with ghost zones.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-20 00:10:19 -03:00
0cde0a8d0d
IO: Remove selection of the HDF5 snapshot type.
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Only snapshots storing primitive variables are supported.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-19 23:49:12 -03:00
ff74b6828a
IO: Remove write_conservative_variables_h5().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-19 23:46:03 -03:00
3987c45cfe
IO: Rewrite write_snapshot_h5().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-19 23:44:04 -03:00
ff4f600922
IO: Slightly rewrite the public subroutines.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-19 21:26:56 -03:00
3962bb2550
IO: Use print_message() in Amun-XML subroutines.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-19 20:07:28 -03:00
a296ebc3bd
HASH: Add subroutine to check hash of the input data.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-19 19:49:40 -03:00
d03b94da6f
BOUNDARIES: Use print_message().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-19 19:11:04 -03:00
b0dee04366
INTERPOLATIONS: Use print_message().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-19 19:04:43 -03:00
7f77af6c98
MPITOOLS: Use print_message().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-19 18:36:22 -03:00
cc38605577
COORDINATES: Use print_message().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-19 18:11:43 -03:00
6afc2c5311
FORCING: Use print_message().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-19 17:58:40 -03:00
546bb5eb0d
EVOLUTION: Use print_message().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-19 17:53:14 -03:00
19a5b56936
TIMERS: Use print_message().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-19 17:37:21 -03:00
e7ec7a6ea9
WORKSPACE: Use print_message().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-19 17:31:33 -03:00
b556b396c3
TIMERS: Remove unnecessary comments.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-19 13:17:04 -03:00
2d7a4b0d3c
COMPRESSION: Remove unnecessary comments.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-19 13:13:43 -03:00
cbc18b97a7
GRAVITY: Slightly rewrite the module.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-19 13:11:39 -03:00
b289da40f2
CONTANTS: Remove unnecessary comments.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-19 13:06:16 -03:00
20cfd3a868
MESH: Use print_message().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-19 13:03:25 -03:00
542a8f978a
REFINEMENT: Use print_message().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-19 12:44:56 -03:00
d961a080ce
SOURCES: Use print_message().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-19 12:39:36 -03:00
42d60bdd0e
STATISTICS: Use print_message().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-19 12:37:18 -03:00
ed59b64960
EQUATIONS: Use print_message().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-19 12:33:47 -03:00
1f2784c1ad
AMUN: Fix the execution timings alignment again.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-19 11:26:25 -03:00
c4c0737661
REFINEMENT: Print refinement criterion limits as ranges.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-19 11:10:38 -03:00
cd25d670fc
BOUNDARIES: Print boundaries as ranges.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-19 11:08:23 -03:00
b90b252dea
COORDINATES: Print domain bounds as ranges.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-19 11:04:37 -03:00
43e60f90d1
HELPERS: Add print_parameter() for parameter ranges.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-19 11:01:40 -03:00
b3bbd9afb3
AMUN: Fix a cut in the final execution timings.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-19 10:30:20 -03:00
bd5fde97f6
HASH, IO: Properly handle the digest type.
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Allow to select the digest type by the user. For the restart files we
always use the XXH64 hash.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-19 10:07:46 -03:00
e92db065ca
BUILD: Add support for XXHASH in regular make build.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-19 08:44:01 -03:00
8eca13d556
IO: Do not set hash type if libxxhash is not used.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-18 23:20:50 -03:00
a10d7d5499
CMAKE, HASH, IO: Detect and use the system libxxhash.
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If it is available, allow to choose between XXH64 (default) and XXH3
hash algorithms provided by the library XXHASH.
If it is not available, the internal slower implementation is used.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-18 23:15:51 -03:00
17d4567d13
SYSTEM: Make store_system() private.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-18 17:54:26 -03:00
51680fe261
SYSTEM: Use print_message().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-18 17:52:29 -03:00
cc8f3b11ab
AMUN: Use print_message().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-18 17:36:18 -03:00
51e0b6dbd4
HELPERS: Add print_message().
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This subroutine accepts two arguments, the location and the message. It
simply prints the message indicating the location to the standard error
output.
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-18 17:24:21 -03:00
be1378d851
AMUN: Rewrite printing of the execution times.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-18 17:18:58 -03:00
f89d5b136a
SYSTEM: Rename module file to system.F90.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-18 16:50:04 -03:00
e9fbfa2fdb
PROBLEM: Rename module and its subroutines to SYSTEM.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-18 16:48:29 -03:00
4d23078805
PROBLEM: Rewrite time estimation in evolve_problem().
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-18 16:38:35 -03:00
70af039f04
AMUN, PROBLEM: Remove unused variables.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-18 15:45:26 -03:00
bfb3001a26
AMUN: Move problem evolution to evolve_problem() in PROBLEM.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-18 14:29:06 -03:00
16f2e7220e
AMUN: Move problem preparation to prepare_problem() in PROBLEM.
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Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
2021-11-18 13:20:43 -03:00
