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Author SHA1 Message Date
Grzegorz Kowal
3087f5288b BOUNDARIES: Use precalculated face indices in boundaries_face_copy(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-29 09:38:49 -02:00
Grzegorz Kowal
36a8caca7c Merge branch 'master' into ghost_array_indices 2014-12-28 08:19:18 -02:00
Grzegorz Kowal
42be67d705 BOUNDARIES: Fix wrong indices in block_edge_copy(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-27 10:50:00 -02:00
Grzegorz Kowal
43507595a6 COORDINATES: Initialize ghost indices for copy operation. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-27 09:32:01 -02:00
Grzegorz Kowal
51c9a03290 COORDINATES: Declare indices for all types of boundaries. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-26 13:12:15 -02:00
Grzegorz Kowal
ab1b9a00d9 COORDINATES: Ghost subarray indices don't have to be allocated. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-26 12:52:38 -02:00
Grzegorz Kowal
7f7d16f689 COORDINATES: Add arrays to store ghost subarray indices. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-26 12:48:34 -02:00
Grzegorz Kowal
fe39a8a981 DRIVER: Fix signals handling for GNU and Intel compilers. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-24 15:04:24 -02:00
Grzegorz Kowal
2430eaae4c README: Spellchecked. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-23 15:34:56 -02:00
Grzegorz Kowal
69dd38fc6f Reformat README file. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-22 13:32:19 -02:00
Grzegorz Kowal
19109c69ca README edited online with Bitbucket 2014-12-22 15:25:24 +00:00
Grzegorz Kowal
4e2125216b README edited online with Bitbucket 2014-12-22 14:26:09 +00:00
Grzegorz Kowal
a7a7afa81a BOUNDARIES: Add timer to update_ghost_cells(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-22 10:56:11 -02:00
Grzegorz Kowal
80236693d5 IO: Use npmax instead of (nprocs - 1). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-19 14:11:40 -02:00
Grzegorz Kowal
1ff1ce50d1 IO: Remove unused variable lcpu. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-19 14:09:32 -02:00
Grzegorz Kowal
50302b0705 MESH: Use npmax instead of (nprocs - 1). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-19 14:08:37 -02:00
Grzegorz Kowal
20891d9531 Merge branch 'optimize_mpi_exchange' 2014-12-19 12:57:58 -02:00
Grzegorz Kowal
bd913cb04d BOUNDARIES: Rewrite MPI part in boundaries_face_prolong(). 
We use exchange_real_arrays() now.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-11 19:42:06 -02:00
Grzegorz Kowal
a9349d967b BOUNDARIES: Rewrite MPI part in boundaries_face_restrict(). 
We use exchange_real_arrays() now.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-11 19:36:00 -02:00
Grzegorz Kowal
233fe1d520 BOUNDARIES: Rewrite MPI part in boundaries_face_copy(). 
We use exchange_real_arrays() now.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-11 19:31:09 -02:00
Grzegorz Kowal
d4f43f2ebe BOUNDARIES: Rewrite MPI part in boundaries_corner_prolong(). 
We use exchange_real_arrays() now.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-11 19:21:37 -02:00
Grzegorz Kowal
d71c749353 BOUNDARIES: Rewrite MPI part in boundaries_corner_restrict(). 
We use exchange_real_arrays() now.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-11 19:16:15 -02:00
Grzegorz Kowal
594564899a BOUNDARIES: Rewrite MPI part in boundaries_corner_copy(). 
We use exchange_real_arrays() now.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-11 19:06:14 -02:00
Grzegorz Kowal
7d0969a280 BOUNDARIES: Add pmeta initialization in boundaries_edge_prolong(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-11 18:48:53 -02:00
Grzegorz Kowal
bdecf83502 BOUNDARIES: Rewrite MPI part in boundaries_edge_prolong(). 
We use exchange_real_arrays() now.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-11 18:30:54 -02:00
Grzegorz Kowal
33375fce41 BOUNDARIES: Rewrite MPI part in boundaries_edge_restrict(). 
We use exchange_real_arrays() now.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-11 18:25:04 -02:00
Grzegorz Kowal
dd3ee8c57d BOUNDARIES: Rewrite MPI part in boundaries_edge_copy(). 
We use exchange_real_arrays() now.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-11 18:16:36 -02:00
Grzegorz Kowal
ac3b2ce520 BOUNDARIES: Rewrite MPI part in boundary_fluxes(). 
Now, instead of separate calls to receive or send data, we process pairs
and exchange data between them directly using exchage_read_arrays().

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-11 14:49:07 -02:00
Grzegorz Kowal
fc80be02d4 MPITOOLS: npairs represents the exact number of processes. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-11 13:23:16 -02:00
Grzegorz Kowal
7fa2f4ecae BLOCKS: Remove unused fields of block_info structure. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-11 13:08:49 -02:00
Grzegorz Kowal
852ee2d1a4 BOUNDARIES: Use new exchange arrays in boundary_corner_prolong(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-11 13:06:07 -02:00
Grzegorz Kowal
69e206731d BOUNDARIES: Use new exchange arrays in boundary_corner_restrict(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-11 13:04:10 -02:00
Grzegorz Kowal
7eef97ae6b BOUNDARIES: Use new exchange arrays in boundary_corner_copy(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-11 13:01:44 -02:00
Grzegorz Kowal
25daf4165a BOUNDARIES: Use new exchange arrays in boundary_edge_prolong(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-11 12:46:20 -02:00
Grzegorz Kowal
c6bd741707 BOUNDARIES: Use new exchange arrays in boundary_edge_restrict(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-11 12:42:20 -02:00
Grzegorz Kowal
738ef159f8 BOUNDARIES: Use new exchange arrays in boundary_edge_copy(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-11 12:39:22 -02:00
Grzegorz Kowal
8243edb33d BOUNDARIES: Use new exchange arrays in boundary_face_prolong(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-11 12:32:50 -02:00
Grzegorz Kowal
969accd19f BOUNDARIES: Use new exchange arrays in boundary_face_restrict(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-11 12:32:07 -02:00
Grzegorz Kowal
3f97569869 BOUNDARIES: Use new exchange arrays in boundary_face_copy(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-11 12:25:50 -02:00
Grzegorz Kowal
25d6251dba BOUNDARIES: Use new exchange arrays in boundary_fluxes(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-11 12:19:21 -02:00
Grzegorz Kowal
51497fe60d BOUNDARIES: Add subroutine to handle exchange block arrays. 
Two new arrays barray and bcount are allocated during the module
initialization and deallocated during the module finalization.

Those two arrays are used to store information about neighbors which
lay on different processes and need some boundary data to exchange.

Subroutines prepare_exchange_array() and release_exchange_array() are
responsinble for initialization of barray and bcount and for
deallocation all array elements, respectively.

Subroutine append_exchange_block() helps to append a new block pairs to
the exchange array.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-11 12:14:08 -02:00
Grzegorz Kowal
3f537aa93f MPITOOLS: Add exchange_real_arrays(). 
The new subroutine exchanges two buffers between two processes at the
same time.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-03 21:47:41 -02:00
Grzegorz Kowal
1248fe62fa BOUNDARIES: Compare neighbor processes. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-01 09:06:08 -02:00
Grzegorz Kowal
53719482ed BOUNDARIES: Fix memory leaking in boundary_fluxes(). 
When blocks belong to the same process which is not the current one, the
block exchange structure is unnecessary allocated, and is not
deallocated after the block exchange.

Fix this by allocating block exchange structures only when the block and
its neighbor processes are different.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-12-01 09:01:18 -02:00
Grzegorz Kowal
53abe5d5f3 BOUNDARIES: Fix line alignment in boundary_corner_prolong(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-11-30 18:48:45 -02:00
Grzegorz Kowal
fde758acb0 BOUNDARIES: Fix line alignment in boundary_corner_restrict(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-11-30 18:46:11 -02:00
Grzegorz Kowal
89dc597150 BOUNDARIES: Fix line alignment in boundary_corner_copy(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-11-30 18:44:04 -02:00
Grzegorz Kowal
59540cc3bd BOUNDARIES: Fix line alignment in boundary_edge_prolong(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-11-30 18:41:37 -02:00
Grzegorz Kowal
96c3cda82b BOUNDARIES: Fix line alignment in boundary_edge_restrict(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-11-30 18:38:16 -02:00
Grzegorz Kowal
0dad5bcf1e BOUNDARIES: Fix line alignment in boundary_edge_copy(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-11-30 18:34:54 -02:00