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65 Commits

Author SHA1 Message Date
Grzegorz Kowal
657a608ce0 PYTHON: Add support for XXH3 hash. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-30 19:02:32 -03:00
Grzegorz Kowal
fd4029a196 PYTHON: Rewrite Amun module to support old and new snapshots. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-11-24 12:33:33 -03:00
Grzegorz Kowal
e7612f5cfd PYTHON: It should be 'block x of y'. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-10-15 23:03:26 -03:00
Grzegorz Kowal
27b6daebca PYTHON: Version 0.9.5 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-10-06 18:06:43 -03:00
Grzegorz Kowal
0d4e955eb0 PYTHON: Reduce dimensions for 2D datasets in AmunH5. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-10-06 18:06:07 -03:00
Grzegorz Kowal
9a7235b72d PYTHON: Use None for fields in chunks with dblocks == 0. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-10-06 18:05:58 -03:00
Grzegorz Kowal
51cc3ea83b PYTHON: Determine toplev only for chunks with dblocks > 0. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-10-06 18:05:46 -03:00
Grzegorz Kowal
d217d092ab PYTHON: Version 0.9.4 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-10-06 13:31:05 -03:00
Grzegorz Kowal
e13bd00a0e PYTHON: Replace numpy.empty with numpy.zeros in AmunXML.__fill_chunks(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-10-06 13:07:57 -03:00
Grzegorz Kowal
07fc5c20b0 PYTHON: Create empty chunk fields for chunks with no dblocks. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-10-06 13:02:31 -03:00
Grzegorz Kowal
5eec85e598 PYTHON: Version 0.9.3. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-10-06 10:06:16 -03:00
Grzegorz Kowal
ec8ddac795 PYTHON: Add velocity and magnetic field components. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-10-06 10:05:18 -03:00
Grzegorz Kowal
f4df543b2c PYTHON: Import numpy without abbreviation. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-10-06 09:44:49 -03:00
Grzegorz Kowal
b7496e0b3d PYTHON: Make sure dataset() accepts maxlev > 9. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-10-06 09:37:15 -03:00
Grzegorz Kowal
c2c9c37b45 PYTHON: Version 0.9.2 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-10-05 11:12:07 -03:00
Grzegorz Kowal
6945b90b66 PYTHON: Export WriteVTK through the AmunPy interface. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-10-05 11:11:17 -03:00
Grzegorz Kowal
5a8526ef82 PYTHON: Version 0.9.1. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-10-05 10:59:39 -03:00
Grzegorz Kowal
1c4fa6035d PYTHON: Rewrite vtkio. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-10-05 10:58:44 -03:00
Grzegorz Kowal
e153cd417e PYTHON: Rewrite interpolations. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-10-05 10:19:18 -03:00
Grzegorz Kowal
d714974b33 PYTHON: Restore zmin/zmax/zblocks for 2D AmunXML snapshots. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-10-05 09:38:49 -03:00
Grzegorz Kowal
b6edd6ca97 PYTHON: Version 0.9 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-10-05 09:13:24 -03:00
Grzegorz Kowal
764c1596b5 PYTHON: Improve comments in AmunH5 structures. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-10-05 09:09:24 -03:00
Grzegorz Kowal
919e0ce6c2 PYTHON: Separate deprecated AmunH5 functions. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-10-05 09:05:57 -03:00
Grzegorz Kowal
dbf977de36 PYTHON: Rewrite AmunXML class to use Amun base class. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-10-05 09:03:23 -03:00
Grzegorz Kowal
61d5eeb839 PYTHON: Convert returns to exceptions in Amun class. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-10-04 22:24:08 -03:00
Grzegorz Kowal
8e125253f7 PYTHON: Make AmunH5 class public. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-10-04 22:19:43 -03:00
Grzegorz Kowal
da339f1ac9 PYTHON: Implement AmunH5 class for Amun's HDF5 format. 
Mark the previous subroutines deprecated.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-10-04 22:17:53 -03:00
Grzegorz Kowal
d28194dc23 PYTHON: Add amun.py defining the base class for Amun snapshots. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-10-04 22:15:59 -03:00
Grzegorz Kowal
abd1749945 PYTHON: Use None for no compression of VTK files. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-10-04 22:14:30 -03:00
Grzegorz Kowal
0315941dd9 PYTHON: Bounds of blocks always assume 3 dimensions. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-06-03 16:22:21 -03:00
Grzegorz Kowal
be7e0ea5f2 PYTHON: Add faster block interpolation using ndimage.zoom. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-05-26 18:18:09 -03:00
Grzegorz Kowal
b350ecdedd PYTHON: Add direction derivatives of velocity and magnetic field. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-03-30 10:10:49 -03:00
Grzegorz Kowal
3b14ea26d0 PYTHON: Fix AmunXML.dataset_vtk(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-03-19 18:38:04 -03:00
Grzegorz Kowal
2a30d3d6d1 PYTHON: Add reading vectors of velocity and magnetic field to AmunXML. 
Add these vector to dataset() and to dataset_to_vtk() of AmunXML.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-03-19 18:30:56 -03:00
Grzegorz Kowal
3c1e8a521a PYTHON: Rewrite octree classes. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-03-16 19:15:14 -03:00
Grzegorz Kowal
a22ce343ce PYTHON: Fix VTK file names in amun_dataset_vtk(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-03-16 10:37:48 -03:00
Grzegorz Kowal
b274a3636d PYTHON: Add compression level to subroutines to convert to VTK files. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-03-16 09:50:18 -03:00
Grzegorz Kowal
5a75d7e08c PYTHON: Use getItemsFromLevel() in amun_dataset_vtk(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-03-16 09:42:40 -03:00
Grzegorz Kowal
500d001d4d PYTHON: Fix spelling in AmunXML.dataset_to_vtk(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-03-16 09:29:57 -03:00
Grzegorz Kowal
4f1042586b PYTHON: Remove unused functions from octree. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-03-16 09:19:34 -03:00
Grzegorz Kowal
1698246f26 PYTHON: Improve formatting of the VTK filename in AmunXML. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-03-16 09:18:15 -03:00
Grzegorz Kowal
315c3207d0 PYTHON: Use getItemsFromLevel() to iterate over level items in AmunXML. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-03-16 09:09:37 -03:00
Grzegorz Kowal
1147923801 PYTHON: Calculate the correct index position of OcNode. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-03-16 09:05:24 -03:00
Grzegorz Kowal
59714a7bda PYTHON: Add index position at the current level to octree nodes. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-03-16 08:58:01 -03:00
Grzegorz Kowal
e4ae2ce194 PYTHON: Add octree's function to return a list of items from a given level. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-03-16 08:53:50 -03:00
Grzegorz Kowal
80c3fc1d34 PYTHON: Use itertools for nested loops in octree submodule. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-03-16 08:26:39 -03:00
Grzegorz Kowal
f38122cc71 PYTHON: Slightly improve AmunXML.dataset_to_vtk(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-03-16 06:47:18 -03:00
Grzegorz Kowal
b94f8584d3 PYTHON: Update package version. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-03-15 15:58:31 -03:00
Grzegorz Kowal
bd481a2e91 PYTHON: Update version to 0.6.2. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-03-15 15:56:06 -03:00
Grzegorz Kowal
fc5a846af3 PYTHON: Add amun_dataset_vtk() function. 
This function works only with HDF5 files and its purpose is to convert
the dataset and store it as the OverlappedAMR VTK files, which can be
read by ParaView.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2021-03-15 15:54:26 -03:00