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Author SHA1 Message Date
Grzegorz Kowal
afc2407881 BLOCKS: Rename and rewrite metablock_set_configuration(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-16 18:34:49 -02:00
Grzegorz Kowal
7f16adaf48 BLOCKS: Change metablock_set_* subroutines order. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-16 18:27:37 -02:00
Grzegorz Kowal
94f4dfcc5b BLOCKS: Rewrite metablock_set_level(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-16 18:23:15 -02:00
Grzegorz Kowal
243475ee46 BLOCKS: Rename metablock_set_cpu() to metablock_set_process(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-16 18:18:07 -02:00
Grzegorz Kowal
4ec6184026 BLOCKS: Rewrite subroutine metablock_set_id(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-16 18:13:06 -02:00
Grzegorz Kowal
086cef9b6d BLOCKS: Move metablock_* subroutines to public section. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-16 18:07:36 -02:00
Grzegorz Kowal
759fe27e78 BLOCKS: Rewrite function increase_id(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-16 18:04:01 -02:00
Grzegorz Kowal
b2dbb01cd8 BLOCKS: Rename datablock_set_dims() to set_block_dimensions(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-16 17:58:28 -02:00
Grzegorz Kowal
17b7286345 BLOCKS: Rewrite set/get_last_id(), get_mblocks(), etc. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-16 17:51:03 -02:00
Grzegorz Kowal
81cd8ccb35 BLOCKS: Move set/get_last_id(), get_mblocks(), get_dblocks(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-15 17:20:01 -02:00
Grzegorz Kowal
9c7715bd21 BLOCKS: Use metablock_set_config() in refine_block(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-15 17:15:16 -02:00
Grzegorz Kowal
e63697ff43 BLOCKS: Rewrite derefine_block(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-15 17:09:16 -02:00
Grzegorz Kowal
ff70d00833 BLOCKS: Rewrite significantly subroutine refine_block(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-15 16:56:47 -02:00
Grzegorz Kowal
14109e483b BLOCKS: Move public definitions of (de)refine_block(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-15 14:50:36 -02:00
Grzegorz Kowal
951594d4cb BLOCKS: Move (de)refine_block() to public subroutine section. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-15 14:49:19 -02:00
Grzegorz Kowal
cce39b5c1c BLOCKS: Add insert_metablock_after/before(). 
Those two subroutines insert a new meta block after or before the block
which is provided by additional pointer.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-15 14:13:31 -02:00
Grzegorz Kowal
cc7fb022c0 BLOCKS: Move subroutines (un)link_blocks(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-15 12:08:24 -02:00
Grzegorz Kowal
e9e2f6919f BLOCKS: Rewrite subroutines (de)allocate_datablock(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-15 12:04:12 -02:00
Grzegorz Kowal
0ac1f8f2b9 BLOCKS: Add (de)allocate_metablock() to public list. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-15 11:52:40 -02:00
Grzegorz Kowal
6f9c267d55 BLOCKS: Rewrite allocate_metablock() and deallocate_metablock(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-15 11:50:48 -02:00
Grzegorz Kowal
242abc4ea3 BLOCKS: Rewrite append_datablock() and remove_datablock(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-15 11:27:03 -02:00
Grzegorz Kowal
3081ef8b04 BLOCKS: Rewrite append_metablock() and add remove_metablock(). 
These subroutines not only allocate/deallocate meta blocks, but also
takes care about the appending or removal of the blocks to or from the
meta block list.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-15 11:10:27 -02:00
Grzegorz Kowal
cddf77613e BLOCKS: Rewrite initialize_blocks() and finalize_blocks(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-15 10:33:37 -02:00
Grzegorz Kowal
55545be6f5 BLOCKS: Rewrite comments of module structures and variables. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-15 09:32:58 -02:00
Grzegorz Kowal
0cc5be4249 BLOCKS: Add module subroutines profiling. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-15 08:42:50 -02:00
Grzegorz Kowal
2983ba0580 INTEGRALS: Rewrite module. Add profiling. 
Now, after restarting a job, a new integrals file is created.  Integrals
are stored after interval controlable by the parameter
'integrals_interval'. Also profiling has been added to measure time
spent on the integrals calculation.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-10 12:42:18 -02:00
Grzegorz Kowal
71418b4041 ERROR: Update module description and correct mispellings. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-10 11:34:51 -02:00
Grzegorz Kowal
036b8fb6e8 CONSTANTS: Correct mispelling. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-10 11:32:27 -02:00
Grzegorz Kowal
23c93e55a9 CONSTANTS: Update module description. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-10 11:31:29 -02:00
Grzegorz Kowal
2ad980142b ERROR: Rewrite module a bit and the way messages are printed. 
Subroutine print_error() does not stop the execution anymore.  This
should be controlled by the code.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-10 11:27:39 -02:00
Grzegorz Kowal
1e7cb2a72c DRIVER: Store mesh statistics after restart as well. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-09 12:50:05 -02:00
Grzegorz Kowal
15d98770d0 IO: Return iret value from write_restart_snapshot_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-09 12:42:33 -02:00
Grzegorz Kowal
16dcd443f3 IO: Make Intel Fortran compiler happy. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-09 12:39:57 -02:00
Grzegorz Kowal
6ef8be3a0d IO: Remove read_restart_params_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-09 12:31:15 -02:00
Grzegorz Kowal
a992c1ac3b IO: Rename dtout to hsnap. Print more snapshot info. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-09 12:29:32 -02:00
Grzegorz Kowal
08353c6fca IO: Implement restart snapshot intervals. 
Using the runtime parameter 'restart_interval', which is a value
expressed in hours, we can control how often the restart snapshot is
written.  This is useful for long runs if we want to reduce the risk of
loosing too many processor hours.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-09 12:13:26 -02:00
Grzegorz Kowal
b196256479 IO: Modify the way the job restart is handled by the code. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-09 11:22:23 -02:00
Grzegorz Kowal
2db9d31276 IO: Rename nres to nrest. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-09 10:37:47 -02:00
Grzegorz Kowal
2a0771c462 IO: Describe module parameters. Rename nrest to irest. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-09 10:36:08 -02:00
Grzegorz Kowal
6026039256 IO: Rename write_data_h5() to write_snapshot_h5() and rewrite. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-09 10:15:40 -02:00
Grzegorz Kowal
d6ecf7afcb IO: Add a new subroutine write_restart_snapshot_h5(). 
This subroutine stores restart snapshots in the HDF5 format files.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-09 10:01:07 -02:00
Grzegorz Kowal
cfb20624e7 IO: Update error messages in read_restart_snapshot_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-09 09:43:50 -02:00
Grzegorz Kowal
64cd70413f IO: Rename read_data_h5() to read_restart_snapshot_h5(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-09 09:32:41 -02:00
Grzegorz Kowal
578ddbf7ea IO: Rename public subroutines *_data() to *_snapshot(). 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-09 09:29:22 -02:00
Grzegorz Kowal
c01e0760fe DRIVER, IO: Implement precise snapshot times. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-08 18:07:54 -02:00
Grzegorz Kowal
8009d6ff5c EVOLUTION: Rename n and t to step and time, respectively. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-08 17:34:15 -02:00
Grzegorz Kowal
f08b917208 DRIVER: Increase nrun for the restarted jobs. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-08 17:08:08 -02:00
Grzegorz Kowal
3443dc18aa IO: Rewrite subroutine read_data_h5(). 
The new version of subroutine read_data_h5() allows for restart a job
more efficiently with flexibility of changing the number of used
processes, both smaller or larger than the number of restart files.

Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-08 16:53:26 -02:00
Grzegorz Kowal
a366a9cede MESH: Send primitive variables in redistribute_blocks() too. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-08 15:51:31 -02:00
Grzegorz Kowal
7f585f4ffe IO: Change order of subroutines. 
Signed-off-by: Grzegorz Kowal <grzegorz@amuncode.org>
 2014-01-08 14:36:16 -02:00