Move domain subroutines to new module DOMAINS.

This commit is contained in:
Grzegorz Kowal 2012-07-27 21:37:57 -03:00
parent d5e720fb5c
commit fcac1db487
4 changed files with 493 additions and 395 deletions

478
src/domains.F90 Normal file
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@ -0,0 +1,478 @@
!!******************************************************************************
!!
!! This file is part of the AMUN source code, a program to perform
!! Newtonian or relativistic magnetohydrodynamical simulations on uniform or
!! adaptive mesh.
!!
!! Copyright (C) 2008-2012 Grzegorz Kowal <grzegorz@amuncode.org>
!!
!! This program is free software: you can redistribute it and/or modify
!! it under the terms of the GNU General Public License as published by
!! the Free Software Foundation, either version 3 of the License, or
!! (at your option) any later version.
!!
!! This program is distributed in the hope that it will be useful,
!! but WITHOUT ANY WARRANTY; without even the implied warranty of
!! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
!! GNU General Public License for more details.
!!
!! You should have received a copy of the GNU General Public License
!! along with this program. If not, see <http://www.gnu.org/licenses/>.
!!
!!******************************************************************************
!!
!! module: DOMAINS
!!
!! This module handles the initialization of the problem domains.
!!
!!
!!******************************************************************************
!
module domains
! module variables are not implicit by default
!
implicit none
! module variable to store the problem name
!
character(len=32), save :: problem = "blast"
! by default everything is private
!
private
! declare public subroutines
!
public :: initialize_domains, setup_domain
!- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
!
contains
!
!===============================================================================
!!
!!*** PUBLIC SUBROUTINES *****************************************************
!!
!===============================================================================
!
! subroutine INITIALIZE_DOMAINS:
! -----------------------------
!
! Subroutine prepares module DOMAINS.
!
!
!===============================================================================
!
subroutine initialize_domains()
! include external procedures and variables
!
use parameters, only : get_parameter_string
! local variables are not implicit by default
!
implicit none
!
!-------------------------------------------------------------------------------
!
! get the problem name
!
call get_parameter_string("problem", problem)
!-------------------------------------------------------------------------------
!
end subroutine initialize_domains
!
!===============================================================================
!
! subroutine SETUP_DOMAIN:
! -----------------------
!
! Subroutine sets up the domain for selected problem. If there is no special
! domain required, sets up the default domain.
!
!
!===============================================================================
!
subroutine setup_domain()
! local variables are not implicit by default
!
implicit none
!
!-------------------------------------------------------------------------------
!
! select the domain setup depending on the problem name
!
select case(problem)
case default
call setup_domain_default()
end select
!-------------------------------------------------------------------------------
!
end subroutine setup_domain
!
!===============================================================================
!!
!!*** PRIVATE SUBROUTINES ****************************************************
!!
!===============================================================================
!
! subroutine SETUP_DOMAIN_DEFAULT:
! -------------------------------
!
! Subroutine sets the default domain of NxNxN blocks in the right
! configuration.
!
!
!===============================================================================
!
subroutine setup_domain_default()
! include external procedures and variables
!
use blocks , only : pointer_meta, block_meta, block_data &
, append_metablock, append_datablock &
, associate_blocks, metablock_set_leaf &
, metablock_set_config, metablock_set_level &
, metablock_set_coord, metablock_set_bounds
use blocks , only : nsides, nfaces
use boundaries , only : xlbndry, xubndry, ylbndry, yubndry, zlbndry, zubndry
use coordinates, only : xmin, xmax, ymin, ymax, zmin, zmax
use coordinates, only : ir, jr, kr, res
! local variables are not implicit by default
!
implicit none
! local variables
!
integer :: i, j, k, n, p, il, jl, kl
real :: xl, xmn, xmx, yl, ymn, ymx, zl, zmn, zmx
! local arrays
!
integer, dimension(3) :: loc, del
! local pointers
!
type(block_meta), pointer :: pmeta, pnext
type(block_data), pointer :: pdata
! allocatable arrays
!
integer, dimension(:,:,:), allocatable :: cfg
! local pointer array
!
type(pointer_meta), dimension(:,:,:), allocatable :: block_array
!
!-------------------------------------------------------------------------------
!
! obtain the number of blocks
!
n = ir * jr * kr
!! PREPARE BLOCK CONFIGURATION ARRAY
!!
! allocate the configuration array
!
allocate(cfg(ir,jr,kr))
! set the block configurations
!
cfg(1:ir,1:jr:2,1:kr:2) = 12
if (jr .gt. 1) then
cfg(1:ir,2:jr:2,1:kr:2) = 43
cfg( ir,1:jr ,1:kr:2) = 13
end if
if (kr .gt. 1) then
cfg(1:ir,1:jr:2,2:kr:2) = 65
if (jr .gt. 1) then
cfg(1:ir,2:jr:2,2:kr:2) = 78
cfg( ir,1:jr ,2:kr:2) = 75
end if
if (ir .eq. 1 .or. mod(jr,2) .eq. 1) then
cfg( ir, jr ,1:kr ) = 15
else
cfg( 1 , jr ,1:kr ) = 48
end if
end if
!! ALLOCATE AND GENERATE META BLOCK CHAIN AND SET BLOCK CONFIGURATIONS
!!
! allocate the block pointer array
!
allocate(block_array(ir,jr,kr))
! generate the gray code for a given configuration and link the block in
! the proper order
!
loc(:) = (/ 0, 0, 0 /)
del(:) = (/ 1, 1, 1 /)
p = 1
do k = 1, kr
if (del(3) .eq. 1) loc(3) = loc(3) + del(3)
do j = 1, jr
if (del(2) .eq. 1) loc(2) = loc(2) + del(2)
do i = 1, ir
if (del(1) .eq. 1) loc(1) = loc(1) + del(1)
! append a new metablock
!
call append_metablock(block_array(loc(1),loc(2),loc(3))%ptr)
! set the configuration type
!
call metablock_set_config(block_array(loc(1),loc(2),loc(3))%ptr &
, cfg(loc(1),loc(2),loc(3)))
! increase the block number
!
p = p + 1
if (del(1) .eq. -1) loc(1) = loc(1) + del(1)
end do
if (del(2) .eq. -1) loc(2) = loc(2) + del(2)
del(1) = - del(1)
end do
if (del(3) .eq. -1) loc(3) = loc(3) + del(3)
del(2) = - del(2)
end do
! deallocate the configuration array
!
deallocate(cfg)
!! FILL OUT THE REMAINING FIELDS AND ALLOCATE AND ASSOCIATE DATA BLOCKS
!!
! calculate block sizes
!
xl = (xmax - xmin) / ir
yl = (ymax - ymin) / jr
zl = (zmax - zmin) / kr
! fill out block structure fields
!
do k = 1, kr
! claculate the block position along Z
!
kl = (k - 1) * res(1,3)
! calculate the Z bounds
!
zmn = zmin + (k - 1) * zl
zmx = zmin + k * zl
do j = 1, jr
! claculate the block position along Y
!
jl = (j - 1) * res(1,2)
! calculate the Y bounds
!
ymn = ymin + (j - 1) * yl
ymx = ymin + j * yl
do i = 1, ir
! claculate the block position along Y
!
il = (i - 1) * res(1,1)
! calculate the Z bounds
!
xmn = xmin + (i - 1) * xl
xmx = xmin + i * xl
! assign a pointer
!
pmeta => block_array(i,j,k)%ptr
! mark it as the leaf
!
call metablock_set_leaf(pmeta)
! set the level
!
call metablock_set_level(pmeta, 1)
! create a new data block
!
call append_datablock(pdata)
! associate meta and data blocks
!
call associate_blocks(pmeta, pdata)
! set block coordinates
!
call metablock_set_coord(pmeta, il, jl, kl)
! set the bounds
!
call metablock_set_bounds(pmeta, xmn, xmx, ymn, ymx, zmn, zmx)
end do
end do
end do
!! ASSIGN THE BLOCK NEIGHBORS
!!
! assign boundaries along the X direction
!
do k = 1, kr
do j = 1, jr
do i = 1, ir - 1
! assign a pointer
!
pmeta => block_array(i ,j,k)%ptr
! assign neighbor
!
pnext => block_array(i+1,j,k)%ptr
! assign their neighbor pointers
!
do p = 1, nfaces
pmeta%neigh(1,2,p)%ptr => pnext
pnext%neigh(1,1,p)%ptr => pmeta
end do
end do
end do
end do
! if periodic boundary conditions set edge block neighbors
!
if (xlbndry .eq. 'periodic' .and. xubndry .eq. 'periodic') then
do k = 1, kr
do j = 1, jr
! assign pointers
!
pmeta => block_array( 1 ,j,k)%ptr
pnext => block_array(ir,j,k)%ptr
! assign their neighbor pointers
!
do p = 1, nfaces
pmeta%neigh(1,1,p)%ptr => pnext
pnext%neigh(1,2,p)%ptr => pmeta
end do
end do
end do
end if
! assign boundaries along the Y direction
!
do k = 1, kr
do j = 1, jr - 1
do i = 1, ir
! assign a pointer
!
pmeta => block_array(i,j ,k)%ptr
! assign neighbor
!
pnext => block_array(i,j+1,k)%ptr
! assign their neighbor pointers
!
do p = 1, nfaces
pmeta%neigh(2,2,p)%ptr => pnext
pnext%neigh(2,1,p)%ptr => pmeta
end do
end do
end do
end do
! if periodic boundary conditions set edge block neighbors
!
if (ylbndry .eq. 'periodic' .and. yubndry .eq. 'periodic') then
do k = 1, kr
do i = 1, ir
! assign pointers
!
pmeta => block_array(i, 1 ,k)%ptr
pnext => block_array(i,jr,k)%ptr
! assign their neighbor pointers
!
do p = 1, nfaces
pmeta%neigh(2,1,p)%ptr => pnext
pnext%neigh(2,2,p)%ptr => pmeta
end do
end do
end do
end if
#if NDIMS == 3
! assign boundaries along the Z direction
!
do k = 1, kr - 1
do j = 1, jr
do i = 1, ir
! assign a pointer
!
pmeta => block_array(i,j,k )%ptr
! assign neighbor
!
pnext => block_array(i,j,k+1)%ptr
! assign their neighbor pointers
!
do p = 1, nfaces
pmeta%neigh(3,2,p)%ptr => pnext
pnext%neigh(3,1,p)%ptr => pmeta
end do
end do
end do
end do
! if periodic boundary conditions set edge block neighbors
!
if (zlbndry .eq. 'periodic' .and. zubndry .eq. 'periodic') then
do j = 1, jr
do i = 1, ir
! assign pointers
!
pmeta => block_array(i,j, 1 )%ptr
pnext => block_array(i,j,kr)%ptr
! assign their neighbor pointers
!
do p = 1, nfaces
pmeta%neigh(3,1,p)%ptr => pnext
pnext%neigh(3,2,p)%ptr => pmeta
end do
end do
end do
end if
#endif /* NDIMS == 3 */
! deallocate the block pointer array
!
deallocate(block_array)
!-------------------------------------------------------------------------------
!
end subroutine setup_domain_default
!===============================================================================
!
end module domains

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@ -161,12 +161,12 @@ name = amun
default: $(name).x
sources = blocks.F90 boundaries.F90 config.F90 constants.F90 coordinates.F90 \
driver.F90 equations.F90 error.F90 evolution.F90 forcing.F90 \
integrals.F90 interpolations.F90 io.F90 mesh.F90 mpitools.F90 \
parameters.F90 problems.F90 random.F90 refinement.F90 scheme.F90 \
timers.F90 variables.F90
objects = blocks.o boundaries.o config.o constants.o coordinates.o driver.o \
equations.o error.o evolution.o forcing.o integrals.o \
domains.F90 driver.F90 equations.F90 error.F90 evolution.F90 \
forcing.F90 integrals.F90 interpolations.F90 io.F90 mesh.F90 \
mpitools.F90 parameters.F90 problems.F90 random.F90 refinement.F90 \
scheme.F90 timers.F90 variables.F90
objects = blocks.o boundaries.o config.o constants.o coordinates.o domains.o \
driver.o equations.o error.o evolution.o forcing.o integrals.o \
interpolations.o io.o mesh.o mpitools.o parameters.o problems.o \
random.o refinement.o scheme.o timers.o variables.o
files = $(sources) makefile make.default config.in license.txt hosts
@ -217,6 +217,7 @@ error.o : error.F90
evolution.o : evolution.F90 blocks.o boundaries.o config.o coordinates.o \
forcing.o interpolations.o mesh.o mpitools.o problems.o \
scheme.o variables.o
domains.o : domains.F90 blocks.o boundaries.o coordinates.o parameters.o
forcing.o : forcing.F90 constants.o coordinates.o mpitools.o \
parameters.o random.o variables.o
integrals.o : integrals.F90 blocks.o coordinates.o evolution.o mpitools.o \
@ -225,12 +226,13 @@ interpolations.o : interpolations.F90 blocks.o coordinates.o parameters.o \
variables.o
io.o : io.F90 blocks.o config.o coordinates.o error.o evolution.o \
mpitools.o random.o scheme.o variables.o
mesh.o : mesh.F90 blocks.o coordinates.o error.o interpolations.o \
mpitools.o problems.o refinement.o variables.o
mesh.o : mesh.F90 blocks.o coordinates.o domains.o error.o \
interpolations.o mpitools.o problems.o refinement.o \
variables.o
mpitools.o : mpitools.F90 timers.o
parameters.o : parameters.F90 mpitools.o
problems.o : problems.F90 blocks.o boundaries.o coordinates.o \
equations.o error.o parameters.o scheme.o variables.o
problems.o : problems.F90 blocks.o coordinates.o equations.o error.o \
parameters.o scheme.o variables.o
refinement.o : refinement.F90 blocks.o coordinates.o parameters.o \
scheme.o variables.o
scheme.o : scheme.F90 blocks.o coordinates.o interpolations.o \

View File

@ -154,9 +154,10 @@ module mesh
use blocks , only : nchild, nsides, nfaces
use blocks , only : get_mblocks, get_nleafs
use coordinates, only : minlev, maxlev, res
use domains , only : setup_domain
use error , only : print_info, print_error
use mpitools, only : master, nproc, nprocs
use problems , only : setup_domain, setup_problem
use problems , only : setup_problem
use refinement , only : check_refinement_criterion
implicit none

View File

@ -45,7 +45,7 @@ module problems
! declare public subroutines
!
public :: initialize_problems, setup_domain, setup_problem
public :: initialize_problems, setup_problem
!- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
!
@ -87,36 +87,6 @@ module problems
!
!===============================================================================
!
! subroutine SETUP_DOMAIN:
! -----------------------
!
! Subroutine sets up the domain for selected problem. If there is no special
! domain required, sets up the default domain.
!
!
!===============================================================================
!
subroutine setup_domain()
! local variables are not implicit by default
!
implicit none
!
!-------------------------------------------------------------------------------
!
! select the domain setup depending on the problem name
!
select case(problem)
case default
call setup_domain_default()
end select
!-------------------------------------------------------------------------------
!
end subroutine setup_domain
!
!===============================================================================
!
! subroutine SETUP_PROBLEM:
! ------------------------
!
@ -171,359 +141,6 @@ module problems
!!
!===============================================================================
!
! subroutine SETUP_DOMAIN_DEFAULT:
! -------------------------------
!
! Subroutine sets the default domain of NxNxN blocks in the right
! configuration.
!
!
!===============================================================================
!
subroutine setup_domain_default()
! include external procedures and variables
!
use blocks , only : pointer_meta, block_meta, block_data &
, append_metablock, append_datablock &
, associate_blocks, metablock_set_leaf &
, metablock_set_config, metablock_set_level &
, metablock_set_coord, metablock_set_bounds
use blocks , only : nsides, nfaces
use boundaries , only : xlbndry, xubndry, ylbndry, yubndry, zlbndry, zubndry
use coordinates, only : xmin, xmax, ymin, ymax, zmin, zmax
use coordinates, only : ir, jr, kr, res
! local variables are not implicit by default
!
implicit none
! local variables
!
integer :: i, j, k, n, p, il, jl, kl
real :: xl, xmn, xmx, yl, ymn, ymx, zl, zmn, zmx
! local arrays
!
integer, dimension(3) :: loc, del
! local pointers
!
type(block_meta), pointer :: pmeta, pnext
type(block_data), pointer :: pdata
! allocatable arrays
!
integer, dimension(:,:,:), allocatable :: cfg
! local pointer array
!
type(pointer_meta), dimension(:,:,:), allocatable :: block_array
!
!-------------------------------------------------------------------------------
!
! obtain the number of blocks
!
n = ir * jr * kr
!! PREPARE BLOCK CONFIGURATION ARRAY
!!
! allocate the configuration array
!
allocate(cfg(ir,jr,kr))
! set the block configurations
!
cfg(1:ir,1:jr:2,1:kr:2) = 12
if (jr .gt. 1) then
cfg(1:ir,2:jr:2,1:kr:2) = 43
cfg( ir,1:jr ,1:kr:2) = 13
end if
if (kr .gt. 1) then
cfg(1:ir,1:jr:2,2:kr:2) = 65
if (jr .gt. 1) then
cfg(1:ir,2:jr:2,2:kr:2) = 78
cfg( ir,1:jr ,2:kr:2) = 75
end if
if (ir .eq. 1 .or. mod(jr,2) .eq. 1) then
cfg( ir, jr ,1:kr ) = 15
else
cfg( 1 , jr ,1:kr ) = 48
end if
end if
!! ALLOCATE AND GENERATE META BLOCK CHAIN AND SET BLOCK CONFIGURATIONS
!!
! allocate the block pointer array
!
allocate(block_array(ir,jr,kr))
! generate the gray code for a given configuration and link the block in
! the proper order
!
loc(:) = (/ 0, 0, 0 /)
del(:) = (/ 1, 1, 1 /)
p = 1
do k = 1, kr
if (del(3) .eq. 1) loc(3) = loc(3) + del(3)
do j = 1, jr
if (del(2) .eq. 1) loc(2) = loc(2) + del(2)
do i = 1, ir
if (del(1) .eq. 1) loc(1) = loc(1) + del(1)
! append a new metablock
!
call append_metablock(block_array(loc(1),loc(2),loc(3))%ptr)
! set the configuration type
!
call metablock_set_config(block_array(loc(1),loc(2),loc(3))%ptr &
, cfg(loc(1),loc(2),loc(3)))
! increase the block number
!
p = p + 1
if (del(1) .eq. -1) loc(1) = loc(1) + del(1)
end do
if (del(2) .eq. -1) loc(2) = loc(2) + del(2)
del(1) = - del(1)
end do
if (del(3) .eq. -1) loc(3) = loc(3) + del(3)
del(2) = - del(2)
end do
! deallocate the configuration array
!
deallocate(cfg)
!! FILL OUT THE REMAINING FIELDS AND ALLOCATE AND ASSOCIATE DATA BLOCKS
!!
! calculate block sizes
!
xl = (xmax - xmin) / ir
yl = (ymax - ymin) / jr
zl = (zmax - zmin) / kr
! fill out block structure fields
!
do k = 1, kr
! claculate the block position along Z
!
kl = (k - 1) * res(1,3)
! calculate the Z bounds
!
zmn = zmin + (k - 1) * zl
zmx = zmin + k * zl
do j = 1, jr
! claculate the block position along Y
!
jl = (j - 1) * res(1,2)
! calculate the Y bounds
!
ymn = ymin + (j - 1) * yl
ymx = ymin + j * yl
do i = 1, ir
! claculate the block position along Y
!
il = (i - 1) * res(1,1)
! calculate the Z bounds
!
xmn = xmin + (i - 1) * xl
xmx = xmin + i * xl
! assign a pointer
!
pmeta => block_array(i,j,k)%ptr
! mark it as the leaf
!
call metablock_set_leaf(pmeta)
! set the level
!
call metablock_set_level(pmeta, 1)
! create a new data block
!
call append_datablock(pdata)
! associate meta and data blocks
!
call associate_blocks(pmeta, pdata)
! set block coordinates
!
call metablock_set_coord(pmeta, il, jl, kl)
! set the bounds
!
call metablock_set_bounds(pmeta, xmn, xmx, ymn, ymx, zmn, zmx)
end do
end do
end do
!! ASSIGN THE BLOCK NEIGHBORS
!!
! assign boundaries along the X direction
!
do k = 1, kr
do j = 1, jr
do i = 1, ir - 1
! assign a pointer
!
pmeta => block_array(i ,j,k)%ptr
! assign neighbor
!
pnext => block_array(i+1,j,k)%ptr
! assign their neighbor pointers
!
do p = 1, nfaces
pmeta%neigh(1,2,p)%ptr => pnext
pnext%neigh(1,1,p)%ptr => pmeta
end do
end do
end do
end do
! if periodic boundary conditions set edge block neighbors
!
if (xlbndry .eq. 'periodic' .and. xubndry .eq. 'periodic') then
do k = 1, kr
do j = 1, jr
! assign pointers
!
pmeta => block_array( 1 ,j,k)%ptr
pnext => block_array(ir,j,k)%ptr
! assign their neighbor pointers
!
do p = 1, nfaces
pmeta%neigh(1,1,p)%ptr => pnext
pnext%neigh(1,2,p)%ptr => pmeta
end do
end do
end do
end if
! assign boundaries along the Y direction
!
do k = 1, kr
do j = 1, jr - 1
do i = 1, ir
! assign a pointer
!
pmeta => block_array(i,j ,k)%ptr
! assign neighbor
!
pnext => block_array(i,j+1,k)%ptr
! assign their neighbor pointers
!
do p = 1, nfaces
pmeta%neigh(2,2,p)%ptr => pnext
pnext%neigh(2,1,p)%ptr => pmeta
end do
end do
end do
end do
! if periodic boundary conditions set edge block neighbors
!
if (ylbndry .eq. 'periodic' .and. yubndry .eq. 'periodic') then
do k = 1, kr
do i = 1, ir
! assign pointers
!
pmeta => block_array(i, 1 ,k)%ptr
pnext => block_array(i,jr,k)%ptr
! assign their neighbor pointers
!
do p = 1, nfaces
pmeta%neigh(2,1,p)%ptr => pnext
pnext%neigh(2,2,p)%ptr => pmeta
end do
end do
end do
end if
#if NDIMS == 3
! assign boundaries along the Z direction
!
do k = 1, kr - 1
do j = 1, jr
do i = 1, ir
! assign a pointer
!
pmeta => block_array(i,j,k )%ptr
! assign neighbor
!
pnext => block_array(i,j,k+1)%ptr
! assign their neighbor pointers
!
do p = 1, nfaces
pmeta%neigh(3,2,p)%ptr => pnext
pnext%neigh(3,1,p)%ptr => pmeta
end do
end do
end do
end do
! if periodic boundary conditions set edge block neighbors
!
if (zlbndry .eq. 'periodic' .and. zubndry .eq. 'periodic') then
do j = 1, jr
do i = 1, ir
! assign pointers
!
pmeta => block_array(i,j, 1 )%ptr
pnext => block_array(i,j,kr)%ptr
! assign their neighbor pointers
!
do p = 1, nfaces
pmeta%neigh(3,1,p)%ptr => pnext
pnext%neigh(3,2,p)%ptr => pmeta
end do
end do
end do
end if
#endif /* NDIMS == 3 */
! deallocate the block pointer array
!
deallocate(block_array)
!-------------------------------------------------------------------------------
!
end subroutine setup_domain_default
!
!===============================================================================
!
! subroutine SETUP_PROBLEM_BLAST: